Gene detail

Detail information of GWHGAAZE010351

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002301914.2	0	hypothetical protein POPTR_0002s00940g, partial [Populus trichocarpa]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	3E-135	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|B9GPR7\|B9GPR7_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE81187.2} (Fragment)
TAIR10	AT4G08850.2	1E-114	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	4634581	4641016	-
GWHAAZE00000003	mRNA	4634581	4641016	-
GWHAAZE00000003	exon	4639378	4641016	-
GWHAAZE00000003	exon	4638743	4639285	-
GWHAAZE00000003	exon	4634581	4634750	-
GWHAAZE00000003	CDS	4639378	4641016	-
GWHAAZE00000003	CDS	4638743	4639285	-
GWHAAZE00000003	CDS	4634581	4634750	-

Transcript Sequence
>GWHTAAZE010363 ATGAGCCGGTCTACGAGTCACTGTAAGTGGGAGGGCATTGGTTGCAATGAGGCAGGAAGTGTCACTTTTATATCATGCCCTCGAAATCCTTATTTCGATGGTGAAGTTGGTATGGATGAGCTTCACTTGCCTTCATTTCAAAACCTTGAAAGCCTTGATCTTTTTGATTGTGGGCTTAAAGGAACCATCCCATATGAAATCGGTATGCTTTCCAAACTTACCCAACTTCATTTTTTTGGCAATTCTCTTTCAGCTGGTAACCTACCCTCTTCACTGGCCAACCTCACAAGGCTAACAAAGCTCGACATTTCTTATAATAGTATGAATGGCCCCATTCCATTAGAAGAATTAGGGAATCTAAAGAATTTGAGTTCTCTAGACCTTAGTGGAAACTTATTTTCTGTTCCAATTCCTTCATCTATCGGTTCCTTGACCCATTTAACCGAATTATACCTTAATGGAAATAGATTCGCAGGGTCCATCCCATCTGAATTAGGAAATCTGAAAAATCTGGAACATTTGAACCTTGGTAGCAATAACTTTTCAGGTCCAATCCCTTCATCTATCGGTTCCTTGACCCAATTAATCGACTTACACCTTGATGGAAATAGATTCACAGGGCCCATCCCATCCGAATTAGGAAATCTAAAAAATCTCGAATATTTGAACATTGGTAGCAACAACTTTCTAGGTCCAATCCCTTCATCGATAGGTGTCTTAACCCATTTAAACAAGTTGATAATTTCTAGGAATCATTTCACTGGATTTGTTTTGTCAAAAATACAAAATCTAATAAATTTGGAATATATTGACCTTTCACGAAATCAACTCAACGGGTCCATCCCATCCGAAATAGGAAATCTCATGAATCTTGCATTCTTAGACCTTGGTAACAACTACTTTTCAGGTCCAATCCCTTCACGGATTTATGCATTATCCAATTTAACCCACTTGGGACTTTATGGGAATCAATTCACCGGGTTCATTCCATTCAAAGAATTAGGGAATCTAAAGAATTTGGAATTTCTCGACCTAGGTACAAACTTATTTTCTGGTCCAATCCTTTCATATGTTGGTTTCTTGACCCATTTAACCTCCTTGGACCTTTCTCGAAATCATCTCACCGGGTCCATCCCATCCGAATTAGAAAATCTGAAAAGTTTGGAATATTTGCACCTTGGTAACAACTACTTTTCGGGTCCAATCCCTTTGACTTTAGGACTCTTGGTTAATTTAAGAGATCTAGACCTTTCTCACAATTTTTTTAATGGCACCATACCTGATCACCTATCTTACTTGTATAACTTAGACAACATCAATCTCTCATACAATAAACTTGTTGGCCCTGTCCCTACCACCTTTTGGAAACTGTGCTCCACCTCAGAAATTCAGTTATTCGGGAATGGTGGGTTAGAGGGTAATCTCAGCTGCGAATTAGAGATGAAGAACCCCAAGGGCAACCATAGCTGCAAATTAGAAATGAAGGGTCAAAATGGCAACCATAGTTGCGAATTAGAAATGAAGGAGCAGAACAAGAGGACAAGTAGAGTTCGGCAGTTTATCCCCATTATTATTCTTCCAATCACCATTTCACTTGCCATATGGATGATCCTTGGAGCCCATAAGTTCTTTTCTTGGCACATCATCAGATCAACAAATGACTTTGACATAGAACATTGCATTGGGACTGGAGGTTATGGCAGCGTTTATAGGGCTCAACTGCCAAGTGGCGAAATAGTTGCCTTAAAGAAACTTCATCGTTTTGAAGCTGAGGAGCCAGCTTTCGACAAGAGCTTCAAGAATGAAGTGGAAGTGTTATCAAATATAAGACATAAAAACACTGTCAAACTTTATGGGTTCTGTTTTCACAATAGGTGCATGTTCCTTGTTTATGAATACATGGAAAGGGGAAGCTTATTCTCTGCCCTCAAAGACGGTATCGAAGCTGTTGAATTGGATTGGACTAAAAGGGTAAGTCTCGTTAAGGGCATAGCACATGCTTTATCTTACATGCATCACGATTGTACTCCACCTATTGCTCATCGGGACATTTCAAGTAATTACATTCTCTTGAACTCAAAACAAGATGCATTTGTAGCGGACTTTGGTGCAGCTAGGTTGTTATCTCCCGATTCATCGAACCAAACTGTAATTGCAGGCACCCGCGGATATATTGCTCCAGGGGCGTGCGGCGCCGAGGTGTGGCAGGGGGCTGAGGCACTGGCAATTCCGCTCGGTACTACCAATGCCGTGCGGCATCAGTGCGTGCGGCATTGCCTCGAGGGGTGTGGCACTGCTCTTGTAAACCACCTAGTTTTGCCTGAAAAAACTCTGTATTGCCATGGAGATTGA

Network for GWHGAAZE010351

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	146	205	1.60E-07
PF00560.34	LRR_1	218	240	0.28
PF13855.7	LRR_8	242	300	6.30E-07
PF12799.8	LRR_4	362	402	3.00E-07
PF13855.7	LRR_8	411	468	5.50E-07
PF00069.26	Pkinase	557	728	2.10E-31

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.604
	SRR3591706	second leaf	0.130
	SRR3591707	mature leaf	0.141
	SRR3591708	Shoot apex	0.883
	SRR3591709	Stem	0.221
	SRR3591710	White floral bud	0.111
	SRR3591711	White flower	0.244
	SRR3591712	Green floral bud	0.046
	SRR3591713	Yellow flower	0.068
SRP173429	SRR8316895	Juvenile bud stage	3.756
	SRR8316896	Juvenile bud stage	3.163
	SRR8316897	Juvenile bud stage	0.810
	SRR8316894	Third green stage	0.393
	SRR8316900	Third green stage	0.108
	SRR8316901	Third green stage	0.093
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.652
	SRR8316903	Complete white stage	0.473
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.106
SRP132670	SRR6706286	Control	0.184
	SRR6706287	Light intensity 50%	0.259
	SRR6706288	Light intensity 20%	0.208
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.528
	CNS0095593	Slightly white alabastrum(diploid) 2	0.809
	CNS0095594	Slightly white alabastrum(diploid) 3	0.649
	CNS0095595	Whole white alabastrum(diploid) 2	0.208
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.623
	CNS0095598	Silvery flower (diploied) 1	1.560
	CNS0095599	Silvery flower (diploied) 2	0.913
	CNS0095600	Silvery flower (diploied) 3	0.188
	CNS0095601	Golden flower (diploid) 1	0.459
	CNS0095602	Golden flower (diploid) 2	1.374
	CNS0095603	Golden flower (diploid) 3	1.063
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.499
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.301
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.325
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.157
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.079
	CNS0095610	Silvery flower (tetraploid) 1	0.035
	CNS0095611	Silvery flower (tetraploid) 2	0.159
	CNS0095612	Silvery flower (tetraploid) 3	0.101
	CNS0095613	Golden flower (tetraploid) 1	0.021
	CNS0095614	Golden flower (tetraploid) 2	0.137
	CNS0095615	Golden flower (tetraploid) 3	0.039
CRA001975	CRR073297	Stem 1	1.611
	CRR073298	Stem 2	1.465
	CRR073299	Stem 3	0.193
	CRR073300	Leaf 1	0.360
	CRR073301	Leaf 2	0.227
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.016
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.065
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.022
	CRR073317	Gold flowering 3	0.181
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000