Gene detail

Detail information of GWHGAAZE010282

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010251518.1	3.78508E-94	PREDICTED: uncharacterized zinc finger CCHC domain-containing protein At4g19190 [Nelumbo nucifera]
Swissprot	tr\|Q8VZ67\|Y4919_ARATH	7E-87	Uncharacterized zinc finger CCHC domain-containing protein At4g19190
trEMBL	tr\|A0A061GE82\|A0A061GE82_THECC	3E-94	Zinc knuckle family protein isoform 1 {ECO:0000313\|EMBL:EOY25354.1}
TAIR10	AT4G19190.1	6E-61	zinc knuckle (CCHC-type) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	2786148	2791350	+
GWHAAZE00000003	mRNA	2786148	2791350	+
GWHAAZE00000003	exon	2786148	2786267	+
GWHAAZE00000003	exon	2786372	2786434	+
GWHAAZE00000003	exon	2786765	2786919	+
GWHAAZE00000003	exon	2787079	2787168	+
GWHAAZE00000003	exon	2791113	2791350	+
GWHAAZE00000003	CDS	2786148	2786267	+
GWHAAZE00000003	CDS	2786372	2786434	+
GWHAAZE00000003	CDS	2786765	2786919	+
GWHAAZE00000003	CDS	2787079	2787168	+
GWHAAZE00000003	CDS	2791113	2791350	+

Transcript Sequence
>GWHTAAZE010294 ATGGTCACACTCATACCTGAATCAGAAGCCATGGCACCCTCTCTCTTATCCCAATCAGCCGTAAGTGGATTGCCGAGCAGACCAATGCTCAGCGACCGCCGTGCTCAAGAAGTCGCCGAGTATGCCCAGGAACAGGAGTTCTTCCGTCAGAGTGCTCTTGTATCCAAGAAAGAGAAGGAAAAGATGGAGATGATGAAAGCTGTTAGCTTTATGTATATCCGTCCACCTGGTTATAATCCGGAAAGTGCCAAAGCTGCAGAGGTTGCAGATGAGAGGAAAATTCAGGATCCGGATAATGCCTCTCAAGACACACCTTTGGATGTGGCCTCGGCCCCACTTGAGGAGAAAAAGAAACCAAGGCCCAAGGATGTTTTCGGTCGTGCTTTACCAACAGAAGAACAGTTTGAAGTACTTAAAAATGCTCCAAGGTTAGAAACTGGTGTTGCTGCAAGAGCGAAGCCATTCGGAATTGAAATACGCAATGTGAAGTGTTTAAGATGTGGAACCTATGGCCACCAAAGCGGTGATCGTGAATGTCCACTGAAGGATGCTATAATGCCTAATGAAGAGAGTCGACTGAAGAAAGATGACCCCTTAACAGCTATGATGGCTCACATAGATTCTAGTGAGGTAATGTTATTTTTCGTTAGTAGTTCAGAAAGTTAG

Network for GWHGAAZE010282

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15288.7	zf-CCHC_6	162	183	3.60E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06066	CIR	Notch signaling pathway	map04330

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.897
	SRR3591706	second leaf	6.073
	SRR3591707	mature leaf	4.014
	SRR3591708	Shoot apex	3.143
	SRR3591709	Stem	8.329
	SRR3591710	White floral bud	9.052
	SRR3591711	White flower	7.432
	SRR3591712	Green floral bud	6.954
	SRR3591713	Yellow flower	6.157
SRP173429	SRR8316895	Juvenile bud stage	3.221
	SRR8316896	Juvenile bud stage	4.657
	SRR8316897	Juvenile bud stage	1.604
	SRR8316894	Third green stage	2.398
	SRR8316900	Third green stage	5.982
	SRR8316901	Third green stage	4.273
	SRR8316898	Complete white stage	2.407
	SRR8316899	Complete white stage	5.686
	SRR8316903	Complete white stage	3.377
	SRR8316902	Silver flowering stage	0.964
	SRR8316904	Silver flowering stage	3.571
	SRR8316905	Silver flowering stage	1.414
	SRR8316906	Gold flowering stage	4.522
	SRR8316907	Gold flowering stage	2.104
	SRR8316908	Gold flowering stage	4.105
SRP132670	SRR6706286	Control	4.004
	SRR6706287	Light intensity 50%	4.519
	SRR6706288	Light intensity 20%	4.837
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.965
	CNS0095593	Slightly white alabastrum(diploid) 2	2.569
	CNS0095594	Slightly white alabastrum(diploid) 3	1.209
	CNS0095595	Whole white alabastrum(diploid) 2	3.443
	CNS0095596	Whole white alabastrum(diploid) 3	1.930
	CNS0095597	Whole white alabastrum(diploid) 4	3.942
	CNS0095598	Silvery flower (diploied) 1	4.431
	CNS0095599	Silvery flower (diploied) 2	2.620
	CNS0095600	Silvery flower (diploied) 3	4.360
	CNS0095601	Golden flower (diploid) 1	3.466
	CNS0095602	Golden flower (diploid) 2	4.551
	CNS0095603	Golden flower (diploid) 3	4.489
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.012
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.905
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.371
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.676
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.823
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.892
	CNS0095610	Silvery flower (tetraploid) 1	2.916
	CNS0095611	Silvery flower (tetraploid) 2	3.812
	CNS0095612	Silvery flower (tetraploid) 3	2.171
	CNS0095613	Golden flower (tetraploid) 1	3.029
	CNS0095614	Golden flower (tetraploid) 2	3.886
	CNS0095615	Golden flower (tetraploid) 3	2.587
CRA001975	CRR073297	Stem 1	11.328
	CRR073298	Stem 2	7.683
	CRR073299	Stem 3	8.089
	CRR073300	Leaf 1	8.226
	CRR073301	Leaf 2	6.853
	CRR073302	Leaf 3	4.720
	CRR073303	Juvenile bud 1	5.194
	CRR073304	Juvenile bud 2	6.152
	CRR073305	Juvenile bud 3	9.106
	CRR073306	Third green 1	1.981
	CRR073307	Third green 2	2.712
	CRR073308	Third green 3	1.636
	CRR073309	Second white 1	5.087
	CRR073310	Second white 2	4.201
	CRR073311	Second white 3	4.654
	CRR073312	Silver flowering 1	4.077
	CRR073313	Silver flowering 2	4.121
	CRR073314	Silver flowering 3	3.944
	CRR073315	Gold flowering 1	6.978
	CRR073316	Gold flowering 2	9.111
	CRR073317	Gold flowering 3	2.807
	CRR073318	Tawny withering 1	8.209
	CRR073319	Tawny withering 2	7.115
	CRR073320	Tawny withering 3	6.263