Detail information of GWHGAAZE010208


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD30821.10photosystem I P700 apoprotein A1 (chloroplast) [Lonicera japonica]
Swissprottr|Q68S06|PSAA_PANGI0Photosystem I P700 chlorophyll a apoprotein A1 {ECO:0000255|HAMAP-Rule:MF_00458}
trEMBLtr|D3WBQ4|D3WBQ4_LONJA0Photosystem I P700 chlorophyll a apoprotein A1 {ECO:0000256|HAMAP-Rule:MF_00458}
TAIR10ATCG00350.10Photosystem I, PsaA/PsaB protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene124043922124047860-
GWHAAZE00000002mRNA124043922124047860-
GWHAAZE00000002exon124043922124044484-
GWHAAZE00000002exon124044570124044923-
GWHAAZE00000002exon124044980124045074-
GWHAAZE00000002exon124045161124045294-
GWHAAZE00000002exon124045847124047270-
GWHAAZE00000002exon124047341124047860-
GWHAAZE00000002CDS124047341124047860-
GWHAAZE00000002CDS124045847124047270-
GWHAAZE00000002CDS124045161124045294-
GWHAAZE00000002CDS124044980124045074-
GWHAAZE00000002CDS124044570124044923-
GWHAAZE00000002CDS124043922124044484-
Transcript Sequence

Network for GWHGAAZE010208

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00223.20PsaA_PsaB481741.90E-59
PF00223.20PsaA_PsaB1756481.50E-256
PF00223.20PsaA_PsaB6486989.00E-11
PF00223.20PsaA_PsaB7418422.10E-33
PF00223.20PsaA_PsaB84310121.70E-74
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02689psaA Metabolic pathways map01100
Photosynthesismap00195

Gene Ontology

GO term OntologyName
GO:0015979biological_processphotosynthesis
GO:0009522cellular_componentphotosystem I
GO:0009579cellular_componentthylakoid
GO:0016021cellular_componentintegral component of membrane
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.535
SRR3591706second leaf2.005
SRR3591707mature leaf1.786
SRR3591708Shoot apex4.219
SRR3591709Stem0.545
SRR3591710White floral bud0.428
SRR3591711White flower0.507
SRR3591712Green floral bud0.512
SRR3591713Yellow flower0.645
SRP173429 SRR8316895Juvenile bud stage 21.201
SRR8316896Juvenile bud stage 8.301
SRR8316897Juvenile bud stage 28.534
SRR8316894Third green stage 29.800
SRR8316900Third green stage 2.140
SRR8316901Third green stage 1.973
SRR8316898Complete white stage 5.949
SRR8316899Complete white stage 0.410
SRR8316903Complete white stage 7.498
SRR8316902Silver flowering stage10.880
SRR8316904Silver flowering stage10.323
SRR8316905Silver flowering stage9.920
SRR8316906Gold flowering stage 0.287
SRR8316907Gold flowering stage 0.227
SRR8316908Gold flowering stage 0.202
SRP132670SRR6706286Control0.601
SRR6706287Light intensity 50%0.723
SRR6706288Light intensity 20%0.459
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.879
CNS0095593Slightly white alabastrum(diploid) 25.496
CNS0095594Slightly white alabastrum(diploid) 37.463
CNS0095595Whole white alabastrum(diploid) 210.008
CNS0095596Whole white alabastrum(diploid) 36.156
CNS0095597Whole white alabastrum(diploid) 48.130
CNS0095598Silvery flower (diploied) 17.396
CNS0095599Silvery flower (diploied) 28.868
CNS0095600Silvery flower (diploied) 33.759
CNS0095601Golden flower (diploid) 18.965
CNS0095602Golden flower (diploid) 22.774
CNS0095603Golden flower (diploid) 33.705
CNS0095604Slightly white alabastrum(tetraploid) 18.651
CNS0095605Slightly white alabastrum(tetraploid) 28.099
CNS0095606Slightly white alabastrum(tetraploid) 32.511
CNS0095607Whole white alabastrum(tetraploid) 17.318
CNS0095608Whole white alabastrum(tetraploid) 29.110
CNS0095609Whole white alabastrum(tetraploid) 32.572
CNS0095610Silvery flower (tetraploid) 12.877
CNS0095611Silvery flower (tetraploid) 23.757
CNS0095612Silvery flower (tetraploid) 32.255
CNS0095613Golden flower (tetraploid) 16.515
CNS0095614Golden flower (tetraploid) 22.747
CNS0095615Golden flower (tetraploid) 31.484
CRA001975CRR073297Stem 15.544
CRR073298Stem 27.341
CRR073299Stem 31.949
CRR073300Leaf 11.511
CRR073301Leaf 21.920
CRR073302Leaf 31.715
CRR073303Juvenile bud 14.436
CRR073304Juvenile bud 22.660
CRR073305Juvenile bud 38.389
CRR073306Third green 13.981
CRR073307Third green 21.946
CRR073308Third green 35.504
CRR073309Second white 14.845
CRR073310Second white 212.006
CRR073311Second white 335.580
CRR073312Silver flowering 123.937
CRR073313Silver flowering 25.184
CRR073314Silver flowering 313.471
CRR073315Gold flowering 121.318
CRR073316Gold flowering 218.842
CRR073317Gold flowering 332.962
CRR073318Tawny withering 14.729
CRR073319Tawny withering 22.811
CRR073320Tawny withering 33.115