Gene detail

Detail information of GWHGAAZE010189

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_054491.1	1.4693E-180	photosystem II protein D2 [Nicotiana tabacum]
Swissprot	tr\|P69686\|PSBD_TOBAC	0	Photosystem II D2 protein {ECO:0000255\|HAMAP-Rule:MF_01383}
trEMBL	tr\|K3Z2T5\|K3Z2T5_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si020853m}
TAIR10	ATCG00270.1	4E-130	photosystem II reaction center protein D

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123940703	123943132	-
GWHAAZE00000002	mRNA	123940703	123943132	-
GWHAAZE00000002	exon	123940703	123940806	-
GWHAAZE00000002	exon	123941114	123941493	-
GWHAAZE00000002	exon	123941988	123942135	-
GWHAAZE00000002	exon	123942222	123942305	-
GWHAAZE00000002	exon	123942433	123943132	-
GWHAAZE00000002	CDS	123942433	123943132	-
GWHAAZE00000002	CDS	123942222	123942305	-
GWHAAZE00000002	CDS	123941988	123942135	-
GWHAAZE00000002	CDS	123941114	123941493	-
GWHAAZE00000002	CDS	123940703	123940806	-

Transcript Sequence
>GWHTAAZE010201 ATGACTATAGCCCTTGGTAAATTTACCAAAGACGAAAATGATTTATTTGATATTATGGATGACTGGTTACGGAGAGACCGTTTCGTTTTTGTAGGCTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTGTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACCCACGGATTGGCCAGTTCCTATTTGGAAGGCTGCAATTTCTTAACTGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGCTATATTCCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTGCGTGCCTATGACTTCGTTTCTCAGGAAATTCATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCGTGGAAACGCTCTTTAATGGAACTTTAGCTTTAGCTGGTCGTGACCAAGAAACCACTGGTTTCGCTTGGTGGAGCCAGGAATGCCCGGCTTATAAATTTATCCGTTATTTACTAAAATCGCCCTTTGGAGGGGAAGGATGGATTGTTAGTGTAGACGATTTGGAAGATATAATCGGAGGACATGTATGGGTAGGTTCCATTTGTATACTTGGCGGAATCTGGCATATCTTAACCAAACCCTTCGCATGGGCTCGACGCGCACTTGTATGGTCCGGGGAGGCTTACTTATCTTATAGTTTAGCGGCTTTATCTGTCTTTGGATTTATTGCTTGTTGTTTTGTATGGTTCAATAATACCGCCTATCCTAGTGAGTTTTACGGACCTACTGGACCCGAAGCTTCTCAAGCTCAAGCATTTACGTTTCTAGTTAGAGATCAACGTCTTGGAGCTAACGTCGGATCCGCTCAAGGACCTACCGGTTTAGGTCATTTGTGGCATGCGGGAAGGGCTCGTGCAGCTGCAGCAGGGTTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCCATGACCCCTCTAAATTAA

Network for GWHGAAZE010189

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00124.20	Photo_RC	29	229	1.40E-57
PF00421.20	PSII	316	437	1.10E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02706	psbD	Metabolic pathways	map01100
K02706	psbD	Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name
GO:0009767	biological_process	photosynthetic electron transport chain
GO:0019684	biological_process	photosynthesis, light reaction
GO:0009772	biological_process	photosynthetic electron transport in photosystem II
GO:0009521	cellular_component	photosystem
GO:0016020	cellular_component	membrane
GO:0016168	molecular_function	chlorophyll binding
GO:0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.960
	SRR3591706	second leaf	3.256
	SRR3591707	mature leaf	3.944
	SRR3591708	Shoot apex	2.146
	SRR3591709	Stem	0.774
	SRR3591710	White floral bud	0.503
	SRR3591711	White flower	0.613
	SRR3591712	Green floral bud	0.443
	SRR3591713	Yellow flower	0.446
SRP173429	SRR8316895	Juvenile bud stage	22.551
	SRR8316896	Juvenile bud stage	10.684
	SRR8316897	Juvenile bud stage	36.053
	SRR8316894	Third green stage	27.043
	SRR8316900	Third green stage	3.250
	SRR8316901	Third green stage	2.057
	SRR8316898	Complete white stage	10.886
	SRR8316899	Complete white stage	0.627
	SRR8316903	Complete white stage	9.100
	SRR8316902	Silver flowering stage	18.355
	SRR8316904	Silver flowering stage	14.482
	SRR8316905	Silver flowering stage	14.624
	SRR8316906	Gold flowering stage	1.297
	SRR8316907	Gold flowering stage	1.122
	SRR8316908	Gold flowering stage	0.822
SRP132670	SRR6706286	Control	0.758
	SRR6706287	Light intensity 50%	1.047
	SRR6706288	Light intensity 20%	0.817
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.510
	CNS0095593	Slightly white alabastrum(diploid) 2	9.458
	CNS0095594	Slightly white alabastrum(diploid) 3	11.985
	CNS0095595	Whole white alabastrum(diploid) 2	14.313
	CNS0095596	Whole white alabastrum(diploid) 3	10.367
	CNS0095597	Whole white alabastrum(diploid) 4	10.067
	CNS0095598	Silvery flower (diploied) 1	10.734
	CNS0095599	Silvery flower (diploied) 2	12.518
	CNS0095600	Silvery flower (diploied) 3	6.745
	CNS0095601	Golden flower (diploid) 1	13.403
	CNS0095602	Golden flower (diploid) 2	3.841
	CNS0095603	Golden flower (diploid) 3	5.820
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.443
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.200
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.507
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.788
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.156
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.943
	CNS0095610	Silvery flower (tetraploid) 1	8.439
	CNS0095611	Silvery flower (tetraploid) 2	8.127
	CNS0095612	Silvery flower (tetraploid) 3	4.922
	CNS0095613	Golden flower (tetraploid) 1	23.573
	CNS0095614	Golden flower (tetraploid) 2	11.709
	CNS0095615	Golden flower (tetraploid) 3	4.634
CRA001975	CRR073297	Stem 1	12.551
	CRR073298	Stem 2	14.980
	CRR073299	Stem 3	6.822
	CRR073300	Leaf 1	6.122
	CRR073301	Leaf 2	5.983
	CRR073302	Leaf 3	4.750
	CRR073303	Juvenile bud 1	6.541
	CRR073304	Juvenile bud 2	6.623
	CRR073305	Juvenile bud 3	11.038
	CRR073306	Third green 1	10.460
	CRR073307	Third green 2	4.923
	CRR073308	Third green 3	10.285
	CRR073309	Second white 1	16.962
	CRR073310	Second white 2	36.875
	CRR073311	Second white 3	66.904
	CRR073312	Silver flowering 1	50.814
	CRR073313	Silver flowering 2	22.052
	CRR073314	Silver flowering 3	24.525
	CRR073315	Gold flowering 1	152.446
	CRR073316	Gold flowering 2	191.817
	CRR073317	Gold flowering 3	274.511
	CRR073318	Tawny withering 1	9.841
	CRR073319	Tawny withering 2	6.924
	CRR073320	Tawny withering 3	6.088