Detail information of GWHGAAZE010187


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD30821.10photosystem I P700 apoprotein A1 (chloroplast) [Lonicera japonica]
Swissprottr|Q68S06|PSAA_PANGI0Photosystem I P700 chlorophyll a apoprotein A1 {ECO:0000255|HAMAP-Rule:MF_00458}
trEMBLtr|D3WBQ4|D3WBQ4_LONJA0Photosystem I P700 chlorophyll a apoprotein A1 {ECO:0000256|HAMAP-Rule:MF_00458}
TAIR10ATCG00350.10Photosystem I, PsaA/PsaB protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123934109123936406+
GWHAAZE00000002mRNA123934109123936406+
GWHAAZE00000002exon123934109123936406+
GWHAAZE00000002CDS123934109123936406+
Transcript Sequence

Network for GWHGAAZE010187

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00223.20PsaA_PsaB487590
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02689psaA Metabolic pathways map01100
Photosynthesismap00195

Gene Ontology

GO term OntologyName
GO:0015979biological_processphotosynthesis
GO:0009522cellular_componentphotosystem I
GO:0016021cellular_componentintegral component of membrane
GO:0009579cellular_componentthylakoid
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.758
SRR3591706second leaf2.352
SRR3591707mature leaf1.882
SRR3591708Shoot apex4.975
SRR3591709Stem0.600
SRR3591710White floral bud0.354
SRR3591711White flower0.493
SRR3591712Green floral bud0.873
SRR3591713Yellow flower0.639
SRP173429 SRR8316895Juvenile bud stage 28.275
SRR8316896Juvenile bud stage 11.342
SRR8316897Juvenile bud stage 40.066
SRR8316894Third green stage 42.559
SRR8316900Third green stage 2.997
SRR8316901Third green stage 2.259
SRR8316898Complete white stage 8.971
SRR8316899Complete white stage 0.491
SRR8316903Complete white stage 10.400
SRR8316902Silver flowering stage15.851
SRR8316904Silver flowering stage15.008
SRR8316905Silver flowering stage15.085
SRR8316906Gold flowering stage 0.296
SRR8316907Gold flowering stage 0.376
SRR8316908Gold flowering stage 0.535
SRP132670SRR6706286Control0.790
SRR6706287Light intensity 50%0.846
SRR6706288Light intensity 20%0.477
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.951
CNS0095593Slightly white alabastrum(diploid) 26.480
CNS0095594Slightly white alabastrum(diploid) 39.295
CNS0095595Whole white alabastrum(diploid) 212.525
CNS0095596Whole white alabastrum(diploid) 38.358
CNS0095597Whole white alabastrum(diploid) 410.653
CNS0095598Silvery flower (diploied) 19.743
CNS0095599Silvery flower (diploied) 212.331
CNS0095600Silvery flower (diploied) 35.494
CNS0095601Golden flower (diploid) 111.466
CNS0095602Golden flower (diploid) 23.989
CNS0095603Golden flower (diploid) 34.850
CNS0095604Slightly white alabastrum(tetraploid) 111.544
CNS0095605Slightly white alabastrum(tetraploid) 211.596
CNS0095606Slightly white alabastrum(tetraploid) 33.446
CNS0095607Whole white alabastrum(tetraploid) 18.497
CNS0095608Whole white alabastrum(tetraploid) 212.534
CNS0095609Whole white alabastrum(tetraploid) 33.480
CNS0095610Silvery flower (tetraploid) 14.203
CNS0095611Silvery flower (tetraploid) 25.558
CNS0095612Silvery flower (tetraploid) 33.162
CNS0095613Golden flower (tetraploid) 18.229
CNS0095614Golden flower (tetraploid) 23.495
CNS0095615Golden flower (tetraploid) 31.998
CRA001975CRR073297Stem 18.788
CRR073298Stem 29.415
CRR073299Stem 32.573
CRR073300Leaf 12.409
CRR073301Leaf 22.924
CRR073302Leaf 33.077
CRR073303Juvenile bud 15.895
CRR073304Juvenile bud 23.942
CRR073305Juvenile bud 312.096
CRR073306Third green 15.756
CRR073307Third green 22.918
CRR073308Third green 36.734
CRR073309Second white 17.632
CRR073310Second white 220.444
CRR073311Second white 357.072
CRR073312Silver flowering 141.594
CRR073313Silver flowering 28.065
CRR073314Silver flowering 321.730
CRR073315Gold flowering 130.815
CRR073316Gold flowering 231.376
CRR073317Gold flowering 351.970
CRR073318Tawny withering 17.326
CRR073319Tawny withering 25.837
CRR073320Tawny withering 35.175