Detail information of GWHGAAZE010180


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD30930.10cytochrome f protein (chloroplast) [Lonicera japonica]
Swissprottr|P06449|CYF_TOBAC0Apocytochrome f (Precursor)
trEMBLtr|D3WBP8|D3WBP8_LONJA0Apocytochrome f {ECO:0000256|HAMAP-Rule:MF_00610} (Precursor)
TAIR10ATCG00540.13E-159photosynthetic electron transfer A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123911447123912343-
GWHAAZE00000002mRNA123911447123912343-
GWHAAZE00000002exon123911447123912343-
GWHAAZE00000002CDS123911447123912343-
Transcript Sequence

Network for GWHGAAZE010180

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16639.6Apocytochr_F_N141683.20E-77
PF01333.20Apocytochr_F_C1802982.30E-50
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02634petA Metabolic pathways map01100
Photosynthesismap00195

Gene Ontology

GO term OntologyName
GO:0015979biological_processphotosynthesis
GO:0031361cellular_componentintegral component of thylakoid membrane
GO:0005506molecular_functioniron ion binding
GO:0009055molecular_functionelectron transfer activity
GO:0020037molecular_functionheme binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.635
SRR3591706second leaf1.855
SRR3591707mature leaf2.248
SRR3591708Shoot apex2.253
SRR3591709Stem0.513
SRR3591710White floral bud0.651
SRR3591711White flower0.636
SRR3591712Green floral bud0.801
SRR3591713Yellow flower0.245
SRP173429 SRR8316895Juvenile bud stage 12.228
SRR8316896Juvenile bud stage 3.733
SRR8316897Juvenile bud stage 15.996
SRR8316894Third green stage 18.145
SRR8316900Third green stage 3.218
SRR8316901Third green stage 2.650
SRR8316898Complete white stage 4.033
SRR8316899Complete white stage 0.587
SRR8316903Complete white stage 4.730
SRR8316902Silver flowering stage7.058
SRR8316904Silver flowering stage8.075
SRR8316905Silver flowering stage7.635
SRR8316906Gold flowering stage 0.567
SRR8316907Gold flowering stage 0.869
SRR8316908Gold flowering stage 0.777
SRP132670SRR6706286Control0.504
SRR6706287Light intensity 50%0.762
SRR6706288Light intensity 20%0.840
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.832
CNS0095593Slightly white alabastrum(diploid) 26.870
CNS0095594Slightly white alabastrum(diploid) 36.165
CNS0095595Whole white alabastrum(diploid) 213.418
CNS0095596Whole white alabastrum(diploid) 38.458
CNS0095597Whole white alabastrum(diploid) 412.760
CNS0095598Silvery flower (diploied) 16.884
CNS0095599Silvery flower (diploied) 26.084
CNS0095600Silvery flower (diploied) 35.787
CNS0095601Golden flower (diploid) 15.603
CNS0095602Golden flower (diploid) 24.293
CNS0095603Golden flower (diploid) 33.921
CNS0095604Slightly white alabastrum(tetraploid) 18.415
CNS0095605Slightly white alabastrum(tetraploid) 27.510
CNS0095606Slightly white alabastrum(tetraploid) 32.684
CNS0095607Whole white alabastrum(tetraploid) 15.846
CNS0095608Whole white alabastrum(tetraploid) 26.913
CNS0095609Whole white alabastrum(tetraploid) 33.747
CNS0095610Silvery flower (tetraploid) 12.907
CNS0095611Silvery flower (tetraploid) 24.946
CNS0095612Silvery flower (tetraploid) 33.104
CNS0095613Golden flower (tetraploid) 17.976
CNS0095614Golden flower (tetraploid) 23.578
CNS0095615Golden flower (tetraploid) 33.305
CRA001975CRR073297Stem 13.144
CRR073298Stem 23.785
CRR073299Stem 32.084
CRR073300Leaf 11.884
CRR073301Leaf 21.909
CRR073302Leaf 32.422
CRR073303Juvenile bud 13.185
CRR073304Juvenile bud 22.725
CRR073305Juvenile bud 33.730
CRR073306Third green 12.610
CRR073307Third green 21.817
CRR073308Third green 33.336
CRR073309Second white 13.854
CRR073310Second white 29.209
CRR073311Second white 317.595
CRR073312Silver flowering 110.062
CRR073313Silver flowering 21.791
CRR073314Silver flowering 35.311
CRR073315Gold flowering 110.179
CRR073316Gold flowering 29.020
CRR073317Gold flowering 38.858
CRR073318Tawny withering 10.780
CRR073319Tawny withering 21.400
CRR073320Tawny withering 31.251