Detail information of GWHGAAZE010161


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD29814.10NADH-plastoquinone oxidoreductase subunit 4 protein (chloroplast) [Lonicera japonica]
Swissprottr|Q68RV6|NU4C_PANGI0NAD(P)H-quinone oxidoreductase chain 4, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00491}
trEMBLtr|D3WBP0|D3WBP0_LONJA0NAD(P)H-quinone oxidoreductase chain 4, chloroplastic {ECO:0000256|HAMAP-Rule:MF_00491, ECO:0000256|SAAS:SAAS00094003}
TAIR10ATCG01050.10NADH-Ubiquinone/plastoquinone (complex I) protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123858992123860512-
GWHAAZE00000002mRNA123858992123860512-
GWHAAZE00000002exon123858992123860512-
GWHAAZE00000002CDS123858992123860512-
Transcript Sequence

Network for GWHGAAZE010161

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00361.21Proton_antipo_M1374212.70E-59
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05575ndhD Metabolic pathways map01100
Oxidative phosphorylationmap00190

Gene Ontology

GO term OntologyName
GO:0042773biological_processATP synthesis coupled electron transport
GO:0055114biological_processoxidation-reduction process
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
GO:0016655molecular_functionoxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.344
SRR3591706second leaf13.382
SRR3591707mature leaf12.740
SRR3591708Shoot apex5.393
SRR3591709Stem2.489
SRR3591710White floral bud1.156
SRR3591711White flower1.911
SRR3591712Green floral bud2.419
SRR3591713Yellow flower1.871
SRP173429 SRR8316895Juvenile bud stage 18.844
SRR8316896Juvenile bud stage 8.743
SRR8316897Juvenile bud stage 23.602
SRR8316894Third green stage 24.149
SRR8316900Third green stage 4.677
SRR8316901Third green stage 3.732
SRR8316898Complete white stage 5.987
SRR8316899Complete white stage 5.446
SRR8316903Complete white stage 5.292
SRR8316902Silver flowering stage9.226
SRR8316904Silver flowering stage9.642
SRR8316905Silver flowering stage7.133
SRR8316906Gold flowering stage 4.448
SRR8316907Gold flowering stage 3.241
SRR8316908Gold flowering stage 4.744
SRP132670SRR6706286Control0.257
SRR6706287Light intensity 50%0.336
SRR6706288Light intensity 20%0.413
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.440
CNS0095593Slightly white alabastrum(diploid) 25.408
CNS0095594Slightly white alabastrum(diploid) 37.501
CNS0095595Whole white alabastrum(diploid) 29.748
CNS0095596Whole white alabastrum(diploid) 38.180
CNS0095597Whole white alabastrum(diploid) 46.629
CNS0095598Silvery flower (diploied) 14.199
CNS0095599Silvery flower (diploied) 23.906
CNS0095600Silvery flower (diploied) 34.332
CNS0095601Golden flower (diploid) 16.873
CNS0095602Golden flower (diploid) 25.316
CNS0095603Golden flower (diploid) 35.258
CNS0095604Slightly white alabastrum(tetraploid) 17.599
CNS0095605Slightly white alabastrum(tetraploid) 27.718
CNS0095606Slightly white alabastrum(tetraploid) 35.001
CNS0095607Whole white alabastrum(tetraploid) 14.133
CNS0095608Whole white alabastrum(tetraploid) 25.733
CNS0095609Whole white alabastrum(tetraploid) 33.645
CNS0095610Silvery flower (tetraploid) 12.992
CNS0095611Silvery flower (tetraploid) 23.947
CNS0095612Silvery flower (tetraploid) 33.776
CNS0095613Golden flower (tetraploid) 13.306
CNS0095614Golden flower (tetraploid) 23.144
CNS0095615Golden flower (tetraploid) 34.806
CRA001975CRR073297Stem 11.716
CRR073298Stem 23.853
CRR073299Stem 30.886
CRR073300Leaf 10.957
CRR073301Leaf 21.890
CRR073302Leaf 30.926
CRR073303Juvenile bud 10.602
CRR073304Juvenile bud 20.476
CRR073305Juvenile bud 31.045
CRR073306Third green 11.226
CRR073307Third green 20.722
CRR073308Third green 30.981
CRR073309Second white 10.824
CRR073310Second white 23.139
CRR073311Second white 34.824
CRR073312Silver flowering 12.763
CRR073313Silver flowering 21.835
CRR073314Silver flowering 31.474
CRR073315Gold flowering 18.305
CRR073316Gold flowering 210.354
CRR073317Gold flowering 38.973
CRR073318Tawny withering 11.481
CRR073319Tawny withering 22.546
CRR073320Tawny withering 31.712