Detail information of GWHGAAZE010152


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD31495.10ATP synthase CF1 alpha subunit protein (chloroplast) [Lonicera japonica]
Swissprottr|Q1KXW5|ATPA_HELAN0ATP synthase subunit alpha, chloroplastic {ECO:0000255|HAMAP-Rule:MF_01346}
trEMBLtr|D3WBM6|D3WBM6_LONJA0ATP synthase subunit alpha, chloroplastic {ECO:0000256|HAMAP-Rule:MF_01346, ECO:0000256|RuleBase:RU004286}
TAIR10ATCG00120.10ATP synthase subunit alpha

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123816009123819499+
GWHAAZE00000002mRNA123816009123819499+
GWHAAZE00000002exon123816009123816159+
GWHAAZE00000002exon123817568123817685+
GWHAAZE00000002exon123818140123819499+
GWHAAZE00000002CDS123816009123816159+
GWHAAZE00000002CDS123817568123817685+
GWHAAZE00000002CDS123818140123819499+
Transcript Sequence

Network for GWHGAAZE010152

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00137.22ATP-synt_C11482.40E-08
PF00006.26ATP-synt_ab1854008.00E-74
PF00306.28ATP-synt_ab_C4075314.30E-43
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02111ATPF1A, atpA Metabolic pathways map01100
Oxidative phosphorylationmap00190
Photosynthesismap00195

Gene Ontology

GO term OntologyName
GO:0015986biological_processATP synthesis coupled proton transport
GO:1902600biological_processproton transmembrane transport
GO:0045261cellular_componentproton-transporting ATP synthase complex, catalytic core F(1)
GO:0045263cellular_componentproton-transporting ATP synthase complex, coupling factor F(o)
GO:0033177cellular_componentproton-transporting two-sector ATPase complex, proton-transporting domain
GO:0005524molecular_functionATP binding
GO:0046933molecular_functionproton-transporting ATP synthase activity, rotational mechanism
GO:0032559molecular_functionadenyl ribonucleotide binding
GO:0015078molecular_functionproton transmembrane transporter activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.688
SRR3591706second leaf20.605
SRR3591707mature leaf21.319
SRR3591708Shoot apex9.377
SRR3591709Stem2.404
SRR3591710White floral bud1.195
SRR3591711White flower1.410
SRR3591712Green floral bud2.151
SRR3591713Yellow flower1.733
SRP173429 SRR8316895Juvenile bud stage 27.052
SRR8316896Juvenile bud stage 12.308
SRR8316897Juvenile bud stage 32.071
SRR8316894Third green stage 36.827
SRR8316900Third green stage 6.348
SRR8316901Third green stage 4.549
SRR8316898Complete white stage 11.130
SRR8316899Complete white stage 3.895
SRR8316903Complete white stage 9.520
SRR8316902Silver flowering stage18.167
SRR8316904Silver flowering stage17.060
SRR8316905Silver flowering stage16.973
SRR8316906Gold flowering stage 4.269
SRR8316907Gold flowering stage 3.054
SRR8316908Gold flowering stage 3.816
SRP132670SRR6706286Control2.132
SRR6706287Light intensity 50%2.528
SRR6706288Light intensity 20%2.543
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.107
CNS0095593Slightly white alabastrum(diploid) 211.004
CNS0095594Slightly white alabastrum(diploid) 311.860
CNS0095595Whole white alabastrum(diploid) 215.772
CNS0095596Whole white alabastrum(diploid) 313.252
CNS0095597Whole white alabastrum(diploid) 412.779
CNS0095598Silvery flower (diploied) 19.253
CNS0095599Silvery flower (diploied) 28.690
CNS0095600Silvery flower (diploied) 39.033
CNS0095601Golden flower (diploid) 111.443
CNS0095602Golden flower (diploid) 27.390
CNS0095603Golden flower (diploid) 38.685
CNS0095604Slightly white alabastrum(tetraploid) 114.992
CNS0095605Slightly white alabastrum(tetraploid) 214.196
CNS0095606Slightly white alabastrum(tetraploid) 311.023
CNS0095607Whole white alabastrum(tetraploid) 18.971
CNS0095608Whole white alabastrum(tetraploid) 211.064
CNS0095609Whole white alabastrum(tetraploid) 39.196
CNS0095610Silvery flower (tetraploid) 16.794
CNS0095611Silvery flower (tetraploid) 28.610
CNS0095612Silvery flower (tetraploid) 37.357
CNS0095613Golden flower (tetraploid) 17.915
CNS0095614Golden flower (tetraploid) 26.585
CNS0095615Golden flower (tetraploid) 38.137
CRA001975CRR073297Stem 119.702
CRR073298Stem 217.593
CRR073299Stem 38.510
CRR073300Leaf 18.703
CRR073301Leaf 27.636
CRR073302Leaf 36.003
CRR073303Juvenile bud 110.036
CRR073304Juvenile bud 28.701
CRR073305Juvenile bud 316.247
CRR073306Third green 110.332
CRR073307Third green 27.049
CRR073308Third green 312.701
CRR073309Second white 112.814
CRR073310Second white 239.261
CRR073311Second white 356.238
CRR073312Silver flowering 141.127
CRR073313Silver flowering 29.844
CRR073314Silver flowering 318.232
CRR073315Gold flowering 163.297
CRR073316Gold flowering 275.509
CRR073317Gold flowering 367.275
CRR073318Tawny withering 16.412
CRR073319Tawny withering 28.106
CRR073320Tawny withering 36.981