Gene detail

Detail information of GWHGAAZE010130

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADD30930.1	0	cytochrome f protein (chloroplast) [Lonicera japonica]
Swissprot	tr\|P06449\|CYF_TOBAC	0	Apocytochrome f (Precursor)
trEMBL	tr\|D3WBP8\|D3WBP8_LONJA	0	Apocytochrome f {ECO:0000256\|HAMAP-Rule:MF_00610} (Precursor)
TAIR10	ATCG00540.1	3E-159	photosynthetic electron transfer A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123738647	123739543	+
GWHAAZE00000002	mRNA	123738647	123739543	+
GWHAAZE00000002	exon	123738647	123739543	+
GWHAAZE00000002	CDS	123738647	123739543	+

Transcript Sequence
>GWHTAAZE010142 ATGATATATATCATAACTCGGACATCCATTTCAAGCGCATATCCCATTTTTGCACAGCAGGGTTATGAAAATCCACGCGAAGCGACGGGGCGTATTGTATGTGCCAATTGCCATTTAGCTAATAAGCCCGTGGATATTGAGGTTCCACAAGCGATACTTCCTGATACTGTATTTGAAGCGGTTGTTCGAATTCCTTATGATATACAACTGAAACAGGTTCTTGCTAATGGTAAAAAGGGGGCTTTGAATGTGGGTGCTGTTCTTATTTTACCGGAGGGGTTTGAATTAGCCCCTCCCGATCGTATTTCTCCCGAGATGAAAGAAAAGATAGGCAATCTGTCTTTTCAGAGCTACCGCCCCAATAAAAAAAATATTCTTGTGATAGGCCCTGTTCCTGGTCAGAAATATAGTGAAATCACCTTTCCTATCCTTTCCCCGGACCCAGTTACTAAGAAAGATGTTCACTTCTTAAAATATCCTATATATGTAGGCGGAAACAGGGGAAGGGGTCAGATTTATCCCGACGGGAGCAAAAGTAACAATACAGTTTATAATGCTACAGCAGCGGGTATAGTAAACAAAATTATACGAAAAGAAAAAGGGGGGTACGAAATAACTATAGCGGATACATCGGATGGACATCAAGTGGTTGATATTATCCCTCCAGGGCCAGAACTTCTTGTTTCAGAAGGCGAATCTATCAAATTTGATCAACCGTTGACAAGTAATCCTAATGTGGGCGGATTTGGTCAGGGAGATGCAGAAATAGTACTTCAAGATCCATTACGTGTCCAAGGCCTTTTGTTCTTCTTGGCATCTGTTATTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAGTTCGAGAAGGTTCAATTGTCCGAAATGAATTTCTAG

Network for GWHGAAZE010130

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16639.6	Apocytochr_F_N	14	168	3.20E-77
PF01333.20	Apocytochr_F_C	180	298	2.30E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02634	petA	Metabolic pathways	map01100
K02634	petA	Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name
GO:0015979	biological_process	photosynthesis
GO:0031361	cellular_component	integral component of thylakoid membrane
GO:0005506	molecular_function	iron ion binding
GO:0009055	molecular_function	electron transfer activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.625
	SRR3591706	second leaf	1.928
	SRR3591707	mature leaf	2.110
	SRR3591708	Shoot apex	2.087
	SRR3591709	Stem	0.513
	SRR3591710	White floral bud	0.798
	SRR3591711	White flower	0.636
	SRR3591712	Green floral bud	0.801
	SRR3591713	Yellow flower	0.245
SRP173429	SRR8316895	Juvenile bud stage	10.877
	SRR8316896	Juvenile bud stage	3.317
	SRR8316897	Juvenile bud stage	13.578
	SRR8316894	Third green stage	15.793
	SRR8316900	Third green stage	2.437
	SRR8316901	Third green stage	2.399
	SRR8316898	Complete white stage	3.802
	SRR8316899	Complete white stage	0.703
	SRR8316903	Complete white stage	3.866
	SRR8316902	Silver flowering stage	6.546
	SRR8316904	Silver flowering stage	6.821
	SRR8316905	Silver flowering stage	6.728
	SRR8316906	Gold flowering stage	0.578
	SRR8316907	Gold flowering stage	0.495
	SRR8316908	Gold flowering stage	0.377
SRP132670	SRR6706286	Control	0.424
	SRR6706287	Light intensity 50%	0.742
	SRR6706288	Light intensity 20%	0.729
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.783
	CNS0095593	Slightly white alabastrum(diploid) 2	4.820
	CNS0095594	Slightly white alabastrum(diploid) 3	5.822
	CNS0095595	Whole white alabastrum(diploid) 2	9.722
	CNS0095596	Whole white alabastrum(diploid) 3	6.795
	CNS0095597	Whole white alabastrum(diploid) 4	10.790
	CNS0095598	Silvery flower (diploied) 1	4.627
	CNS0095599	Silvery flower (diploied) 2	4.768
	CNS0095600	Silvery flower (diploied) 3	4.633
	CNS0095601	Golden flower (diploid) 1	4.582
	CNS0095602	Golden flower (diploid) 2	3.108
	CNS0095603	Golden flower (diploid) 3	3.376
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.831
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.951
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.540
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.085
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.126
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.149
	CNS0095610	Silvery flower (tetraploid) 1	2.805
	CNS0095611	Silvery flower (tetraploid) 2	3.844
	CNS0095612	Silvery flower (tetraploid) 3	2.619
	CNS0095613	Golden flower (tetraploid) 1	7.466
	CNS0095614	Golden flower (tetraploid) 2	3.428
	CNS0095615	Golden flower (tetraploid) 3	2.480
CRA001975	CRR073297	Stem 1	3.502
	CRR073298	Stem 2	3.467
	CRR073299	Stem 3	1.278
	CRR073300	Leaf 1	2.004
	CRR073301	Leaf 2	1.609
	CRR073302	Leaf 3	1.959
	CRR073303	Juvenile bud 1	2.846
	CRR073304	Juvenile bud 2	1.808
	CRR073305	Juvenile bud 3	3.610
	CRR073306	Third green 1	2.482
	CRR073307	Third green 2	1.242
	CRR073308	Third green 3	2.669
	CRR073309	Second white 1	2.683
	CRR073310	Second white 2	8.404
	CRR073311	Second white 3	16.008
	CRR073312	Silver flowering 1	8.347
	CRR073313	Silver flowering 2	2.167
	CRR073314	Silver flowering 3	5.322
	CRR073315	Gold flowering 1	9.378
	CRR073316	Gold flowering 2	7.896
	CRR073317	Gold flowering 3	7.937
	CRR073318	Tawny withering 1	1.053
	CRR073319	Tawny withering 2	1.657
	CRR073320	Tawny withering 3	1.001