Detail information of GWHGAAZE010128


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrYP_004935561.15.4422E-111acetyl-CoA carboxylase beta subunit (chloroplast) [Eleutherococcus senticosus]
Swissprottr|P12219|ACCD_TOBAC9E-113Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic {ECO:0000255|HAMAP-Rule:MF_01395}
trEMBLtr|G9IAY4|G9IAY4_9APIA2E-111Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic {ECO:0000256|HAMAP-Rule:MF_01395}
TAIR10ATCG00500.12E-68acetyl-CoA carboxylase carboxyl transferase subunit beta

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123733257123734923+
GWHAAZE00000002mRNA123733257123734923+
GWHAAZE00000002exon123733257123733729+
GWHAAZE00000002exon123733819123734923+
GWHAAZE00000002CDS123733257123733729+
GWHAAZE00000002CDS123733819123734923+
Transcript Sequence

Network for GWHGAAZE010128

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0052GO:0003989 acetyl-CoA carboxylase activity GOslim:molecular_function
GO:0009317 acetyl-CoA carboxylase complex GOslim:cellular_component
GO:0006633 fatty acid biosynthetic process GOslim:biological_process
map00061 Fatty acid biosynthesis
map00720 Carbon fixation pathways in prokaryotes
map01212 Fatty acid metabolism
map00640 Propanoate metabolism
map00620 Pyruvate metabolism
map01200 Carbon metabolism
map01120 Microbial metabolism in diverse environments
GO:0009579 thylakoid GOslim:cellular_component
GO:0009522 photosystem I GOslim:cellular_component
map00195 Photosynthesis
map01110 Biosynthesis of secondary metabolites


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01039.23Carboxyl_trans3734997.20E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01963accD Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Fatty acid metabolismmap01212
Pyruvate metabolismmap00620
Propanoate metabolismmap00640
Carbon fixation pathways in prokaryotesmap00720
Fatty acid biosynthesismap00061

Gene Ontology

GO term OntologyName
GO:0006633biological_processfatty acid biosynthetic process
GO:0009317cellular_componentacetyl-CoA carboxylase complex
GO:0003989molecular_functionacetyl-CoA carboxylase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.501
SRR3591706second leaf0.178
SRR3591707mature leaf0.090
SRR3591708Shoot apex0.774
SRR3591709Stem0.144
SRR3591710White floral bud0.532
SRR3591711White flower0.528
SRR3591712Green floral bud0.838
SRR3591713Yellow flower0.931
SRP173429 SRR8316895Juvenile bud stage 4.581
SRR8316896Juvenile bud stage 4.193
SRR8316897Juvenile bud stage 9.257
SRR8316894Third green stage 8.136
SRR8316900Third green stage 3.538
SRR8316901Third green stage 1.882
SRR8316898Complete white stage 2.283
SRR8316899Complete white stage 0.632
SRR8316903Complete white stage 2.036
SRR8316902Silver flowering stage4.277
SRR8316904Silver flowering stage4.515
SRR8316905Silver flowering stage4.886
SRR8316906Gold flowering stage 1.018
SRR8316907Gold flowering stage 1.099
SRR8316908Gold flowering stage 1.064
SRP132670SRR6706286Control0.811
SRR6706287Light intensity 50%1.159
SRR6706288Light intensity 20%1.175
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.482
CNS0095593Slightly white alabastrum(diploid) 23.460
CNS0095594Slightly white alabastrum(diploid) 33.828
CNS0095595Whole white alabastrum(diploid) 27.506
CNS0095596Whole white alabastrum(diploid) 37.331
CNS0095597Whole white alabastrum(diploid) 49.040
CNS0095598Silvery flower (diploied) 13.558
CNS0095599Silvery flower (diploied) 23.247
CNS0095600Silvery flower (diploied) 37.545
CNS0095601Golden flower (diploid) 14.924
CNS0095602Golden flower (diploid) 25.598
CNS0095603Golden flower (diploid) 36.444
CNS0095604Slightly white alabastrum(tetraploid) 19.445
CNS0095605Slightly white alabastrum(tetraploid) 27.312
CNS0095606Slightly white alabastrum(tetraploid) 39.777
CNS0095607Whole white alabastrum(tetraploid) 16.001
CNS0095608Whole white alabastrum(tetraploid) 27.094
CNS0095609Whole white alabastrum(tetraploid) 315.435
CNS0095610Silvery flower (tetraploid) 110.656
CNS0095611Silvery flower (tetraploid) 218.541
CNS0095612Silvery flower (tetraploid) 38.662
CNS0095613Golden flower (tetraploid) 19.414
CNS0095614Golden flower (tetraploid) 26.949
CNS0095615Golden flower (tetraploid) 38.458
CRA001975CRR073297Stem 111.890
CRR073298Stem 215.923
CRR073299Stem 34.213
CRR073300Leaf 112.879
CRR073301Leaf 213.294
CRR073302Leaf 36.706
CRR073303Juvenile bud 112.855
CRR073304Juvenile bud 29.392
CRR073305Juvenile bud 311.939
CRR073306Third green 112.647
CRR073307Third green 25.448
CRR073308Third green 314.438
CRR073309Second white 111.420
CRR073310Second white 227.347
CRR073311Second white 347.871
CRR073312Silver flowering 127.374
CRR073313Silver flowering 27.847
CRR073314Silver flowering 312.250
CRR073315Gold flowering 16.699
CRR073316Gold flowering 27.262
CRR073317Gold flowering 33.909
CRR073318Tawny withering 16.983
CRR073319Tawny withering 24.363
CRR073320Tawny withering 35.217