Gene detail

Detail information of GWHGAAZE010120

Functional Annotation

Database	Orthologs	Annotation
Nr	YP_003933958.1	photosystem II CP43 chlorophyll apoprotein [Eucalyptus grandis]
Swissprot	tr\|Q49L02\|PSBC_EUCGG	Photosystem II CP43 reaction center protein {ECO:0000255\|HAMAP-Rule:MF_01496} (Precursor)
trEMBL	tr\|T1QNL1\|T1QNL1_CORGM	Photosystem II CP43 reaction center protein {ECO:0000256\|RuleBase:RU004533, ECO:0000256\|SAAS:SAAS00161411}
TAIR10	ATCG00280.1	photosystem II reaction center protein C

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123708878	123710299	+
GWHAAZE00000002	mRNA	123708878	123710299	+
GWHAAZE00000002	exon	123708878	123710299	+
GWHAAZE00000002	CDS	123708878	123710299	+

Transcript Sequence
>GWHTAAZE010132 ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAATGGAACTTTAGCTTTAGCTGGTCGTGACCAAGAAACCACTGGTTTCGCTTGGTGGGCCGGGAATGCCCGGCTTATAAATTTATCCGGTAAACTACTAGGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTTGAAGTGGCTCATTTCGTACCAGAGAAGCCTATGTATGAACAAGGATTAATTTTACTCCCCCACCTAGCTACTCTAGGTTGGGGGGTAGGTCCCGGCGGGGAAGTTATAGACACTTTTCCATACTTTGTATCTGGAGTACTTCATTTAATCTCCTCTGCAGTATTGGGCTTTGGCGGTATTTATCATGCACTTCTAGGACCTGAGACGCTTGAAGAATCTTTTCCATTCTTCGGTTATGTATGGAAAGATAGAAATAAAATGACTACAATTTTAGGTATTCACTTAATCTTGTTAGGTATAGGTGCTTTTCTTTTAGTATTCAAGGCTCTTTATTTTGGGGGCGTATATGATACCTGGGCGCCGGGAGGGGGAGATGTAAGAAAAATTACCAACTTGACCCTTAGTCCAAGTATTATATTCAGTTATTTACTAAAATCGCCCTTTGGAGGGGAAGGATGGATTGTTAGTGTAGACGATTTGGAAGATATAATCGGAGGACATGTATGGGTAGGTTCCATTTGTATACTTGGCGGAATCTGGCATATCTTAACCAAACCCTTCGCATGGGCTCGACGCGCACTTGTATGGTCCGGGGAGGCTTACTTATCTTATAGTTTAGCGGCTTTATCTGTCTTTGGATTTATTGCTTGTTGTTTTGTATGGTTCAATAATACCGCCTATCCTAGTGAGTTTTACGGACCTACTGGACCCGAAGCTTCTCAAGCTCAAGCATTTACGTTTCTAGTTAGAGATCAACGTCTTGGAGCTAACGTCGGATCCGCTCAAGGACCTACCGGTTTAGGTAAATATTTAATGCGTTCCCCGACCGGAGAAGTCATTTTTGGAGGAGAAACTATGCGTTTTTGGGATCTGCGCGCCCCCTGGTTAGAACCATTAAGGGGTCCAAATGGATTGGACTTGAGTAGGCTGAAAAAAGATATACAACCTTGGCAAGAACGGCGTTCCGCAGAATATATGACTCATGCTCCTTTAGGTTCTTTAAATTCCGTGGGCGGCGTAGCTACCGAGATCAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGCTACTTCTCATTTTGTTCTAGGATTCTTCTTGTTTGTAGGTCATTTGTGGCATGCGGGAAGGGCTCGTGCAGCTGCAGCAGGGTTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCCATGACCCCTCTAAATTAA

Network for GWHGAAZE010120

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00421.20	PSII	31	469	9.70E-143

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02705	psbC	Metabolic pathways	map01100
K02705	psbC	Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name
GO:0009772	biological_process	photosynthetic electron transport in photosystem II
GO:0015979	biological_process	photosynthesis
GO:0009767	biological_process	photosynthetic electron transport chain
GO:0019684	biological_process	photosynthesis, light reaction
GO:0009523	cellular_component	photosystem II
GO:0016020	cellular_component	membrane
GO:0009521	cellular_component	photosystem
GO:0016168	molecular_function	chlorophyll binding
GO:0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.288
	SRR3591706	second leaf	5.772
	SRR3591707	mature leaf	7.628
	SRR3591708	Shoot apex	4.795
	SRR3591709	Stem	1.254
	SRR3591710	White floral bud	0.851
	SRR3591711	White flower	0.688
	SRR3591712	Green floral bud	0.730
	SRR3591713	Yellow flower	0.708
SRP173429	SRR8316895	Juvenile bud stage	48.078
	SRR8316896	Juvenile bud stage	21.828
	SRR8316897	Juvenile bud stage	71.928
	SRR8316894	Third green stage	59.335
	SRR8316900	Third green stage	6.582
	SRR8316901	Third green stage	3.804
	SRR8316898	Complete white stage	20.394
	SRR8316899	Complete white stage	1.246
	SRR8316903	Complete white stage	17.700
	SRR8316902	Silver flowering stage	32.136
	SRR8316904	Silver flowering stage	26.041
	SRR8316905	Silver flowering stage	27.386
	SRR8316906	Gold flowering stage	2.042
	SRR8316907	Gold flowering stage	1.907
	SRR8316908	Gold flowering stage	2.355
SRP132670	SRR6706286	Control	1.869
	SRR6706287	Light intensity 50%	2.469
	SRR6706288	Light intensity 20%	2.040
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.057
	CNS0095593	Slightly white alabastrum(diploid) 2	13.254
	CNS0095594	Slightly white alabastrum(diploid) 3	19.208
	CNS0095595	Whole white alabastrum(diploid) 2	23.412
	CNS0095596	Whole white alabastrum(diploid) 3	16.578
	CNS0095597	Whole white alabastrum(diploid) 4	17.212
	CNS0095598	Silvery flower (diploied) 1	15.780
	CNS0095599	Silvery flower (diploied) 2	16.703
	CNS0095600	Silvery flower (diploied) 3	10.393
	CNS0095601	Golden flower (diploid) 1	17.615
	CNS0095602	Golden flower (diploid) 2	5.772
	CNS0095603	Golden flower (diploid) 3	9.526
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.006
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.262
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.194
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.466
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.540
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.049
	CNS0095610	Silvery flower (tetraploid) 1	11.316
	CNS0095611	Silvery flower (tetraploid) 2	11.963
	CNS0095612	Silvery flower (tetraploid) 3	7.583
	CNS0095613	Golden flower (tetraploid) 1	32.848
	CNS0095614	Golden flower (tetraploid) 2	16.273
	CNS0095615	Golden flower (tetraploid) 3	6.776
CRA001975	CRR073297	Stem 1	20.215
	CRR073298	Stem 2	26.188
	CRR073299	Stem 3	10.873
	CRR073300	Leaf 1	9.059
	CRR073301	Leaf 2	12.008
	CRR073302	Leaf 3	6.712
	CRR073303	Juvenile bud 1	10.308
	CRR073304	Juvenile bud 2	8.668
	CRR073305	Juvenile bud 3	14.817
	CRR073306	Third green 1	15.328
	CRR073307	Third green 2	7.800
	CRR073308	Third green 3	16.171
	CRR073309	Second white 1	25.175
	CRR073310	Second white 2	44.559
	CRR073311	Second white 3	73.864
	CRR073312	Silver flowering 1	59.348
	CRR073313	Silver flowering 2	29.261
	CRR073314	Silver flowering 3	29.006
	CRR073315	Gold flowering 1	247.958
	CRR073316	Gold flowering 2	263.826
	CRR073317	Gold flowering 3	392.152
	CRR073318	Tawny withering 1	13.083
	CRR073319	Tawny withering 2	11.377
	CRR073320	Tawny withering 3	11.446