Detail information of GWHGAAZE010117


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD31154.14.5979E-134RNA polymerase beta'' subunit protein (chloroplast) [Lonicera japonica]
Swissprottr|Q68S16|RPOC2_PANGI1E-107DNA-directed RNA polymerase subunit beta'' {ECO:0000255|HAMAP-Rule:MF_01324}
trEMBLtr|D3WBT7|D3WBT7_LONJA2E-134DNA-directed RNA polymerase subunit beta'' {ECO:0000256|HAMAP-Rule:MF_01324}
TAIR10ATCG00170.12E-79DNA-directed RNA polymerase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123692478123693110-
GWHAAZE00000002mRNA123692478123693110-
GWHAAZE00000002exon123692478123693110-
GWHAAZE00000002CDS123692478123693110-
Transcript Sequence

Network for GWHGAAZE010117

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03046rpoC RNA polymerase map03020

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.049
SRR3591706second leaf0.000
SRR3591707mature leaf0.065
SRR3591708Shoot apex0.225
SRR3591709Stem0.000
SRR3591710White floral bud0.063
SRR3591711White flower0.000
SRR3591712Green floral bud0.125
SRR3591713Yellow flower0.127
SRP173429 SRR8316895Juvenile bud stage 0.764
SRR8316896Juvenile bud stage 0.223
SRR8316897Juvenile bud stage 0.996
SRR8316894Third green stage 1.599
SRR8316900Third green stage 0.370
SRR8316901Third green stage 0.207
SRR8316898Complete white stage 0.079
SRR8316899Complete white stage 0.098
SRR8316903Complete white stage 0.410
SRR8316902Silver flowering stage0.298
SRR8316904Silver flowering stage0.239
SRR8316905Silver flowering stage0.476
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.052
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.132
SRR6706287Light intensity 50%0.098
SRR6706288Light intensity 20%0.069
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.566
CNS0095593Slightly white alabastrum(diploid) 20.371
CNS0095594Slightly white alabastrum(diploid) 30.577
CNS0095595Whole white alabastrum(diploid) 20.551
CNS0095596Whole white alabastrum(diploid) 31.211
CNS0095597Whole white alabastrum(diploid) 41.072
CNS0095598Silvery flower (diploied) 10.408
CNS0095599Silvery flower (diploied) 20.593
CNS0095600Silvery flower (diploied) 30.391
CNS0095601Golden flower (diploid) 10.306
CNS0095602Golden flower (diploid) 20.191
CNS0095603Golden flower (diploid) 30.078
CNS0095604Slightly white alabastrum(tetraploid) 10.381
CNS0095605Slightly white alabastrum(tetraploid) 20.240
CNS0095606Slightly white alabastrum(tetraploid) 30.100
CNS0095607Whole white alabastrum(tetraploid) 10.470
CNS0095608Whole white alabastrum(tetraploid) 20.275
CNS0095609Whole white alabastrum(tetraploid) 30.040
CNS0095610Silvery flower (tetraploid) 10.384
CNS0095611Silvery flower (tetraploid) 20.191
CNS0095612Silvery flower (tetraploid) 30.067
CNS0095613Golden flower (tetraploid) 10.446
CNS0095614Golden flower (tetraploid) 20.202
CNS0095615Golden flower (tetraploid) 30.088
CRA001975CRR073297Stem 10.000
CRR073298Stem 20.095
CRR073299Stem 30.028
CRR073300Leaf 10.085
CRR073301Leaf 20.153
CRR073302Leaf 30.070
CRR073303Juvenile bud 10.049
CRR073304Juvenile bud 20.038
CRR073305Juvenile bud 30.499
CRR073306Third green 10.101
CRR073307Third green 20.000
CRR073308Third green 30.064
CRR073309Second white 10.110
CRR073310Second white 20.483
CRR073311Second white 30.942
CRR073312Silver flowering 10.695
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.337
CRR073315Gold flowering 10.249
CRR073316Gold flowering 20.535
CRR073317Gold flowering 30.180
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.096
CRR073320Tawny withering 30.091