Gene detail

Detail information of GWHGAAZE009947

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010652233.1	0	PREDICTED: BRCT domain-containing protein At4g02110 isoform X1 [Vitis vinifera]
Swissprot	tr\|O04251\|Y4211_ARATH	2E-115	BRCT domain-containing protein At4g02110
trEMBL	tr\|A5C449\|A5C449_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN62071.1}
TAIR10	AT4G02110.1	1E-107	transcription coactivators

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	120411320	120423971	+
GWHAAZE00000002	mRNA	120411320	120423971	+
GWHAAZE00000002	exon	120411320	120411460	+
GWHAAZE00000002	exon	120411537	120411626	+
GWHAAZE00000002	exon	120411728	120411832	+
GWHAAZE00000002	exon	120413096	120413224	+
GWHAAZE00000002	exon	120413355	120413439	+
GWHAAZE00000002	exon	120414206	120414290	+
GWHAAZE00000002	exon	120419588	120419632	+
GWHAAZE00000002	exon	120420174	120422522	+
GWHAAZE00000002	exon	120422677	120422893	+
GWHAAZE00000002	exon	120423393	120423971	+
GWHAAZE00000002	CDS	120411320	120411460	+
GWHAAZE00000002	CDS	120411537	120411626	+
GWHAAZE00000002	CDS	120411728	120411832	+
GWHAAZE00000002	CDS	120413096	120413224	+
GWHAAZE00000002	CDS	120413355	120413439	+
GWHAAZE00000002	CDS	120414206	120414290	+
GWHAAZE00000002	CDS	120419588	120419632	+
GWHAAZE00000002	CDS	120420174	120422522	+
GWHAAZE00000002	CDS	120422677	120422893	+
GWHAAZE00000002	CDS	120423393	120423971	+

Transcript Sequence
>GWHTAAZE009959 ATGCTGGAAGCCAATCAAGGTTCGCCATTTGACCACCAGTCCAAAACTTTCCGTGGCGTCCGTTTTATTCTGCTTGGATTCGACCCCATCAAGAGATCCGAGGTTCCTCTCTCTCTCTCTCTCTAATTATTCATCCGCGGTGTTGTCTCGAAGCTTCTAGATGGCGGTGGAGTTGATGTTGGTCAGTATTGTCCCAATTGCACTCACGTCATCGTTGATAAGCTTGTTTACGATGAACCTGTATGCGTGGCTGCTCGAAGTGATGGAAAGATACTAGTCAATACGTTATGGGTTGAGCATAGCTTTGAGGTTGGAATGCCCGTCGATGCTTCCAATATTATGTACAGGCCTTTAAAAGGATTGACAGGAATTCCTGGTGCCAAATCCCTAATTGTTTGCTTGACTGGATACCAACGGCAAGATCGCGAGGACATCATGGTTTTTGCAATTGCCCTTTCTTATAATACAATGGTTGGCCTGATGGGTGCAAACTTTTCAAAGCCACTGGTTGCAAACAAAGTTACTCATCTCGTATGCTACAAATTTGAAGGGGAGAAATATGAGCTTGCCAAGAAAATGAAGAAGATAAAGCTTGTCAACCATCGGTGGTTGGAAGACTGGTACACCTTAGCTTTTTTGAAAGCCTGGGAAATTCGGCCAGAAGCTGAGTATGATAAAAGTACATATGAGTTAGAGATGATGGAGGCTGAAGCTAAAGATTCTGAAGAAGAAACAGAAGGTATTGCCACAAAGCAATGTGGGGAAGAAGCAACAACTCCCCACCAGATCCAGGTATCAAAGCCAGAAGTCTCAAGGAATCCGTTAGATTCAAGTGCATCTAAACGTTTATTAAATGTTGGAAACACTAATCACAAGGTACCAGTAATAGAAAAAACAAGATCTGATCAGGCCCCGTATTTGCACAAACTTCATAATAATAATCATGAGTTGCTTGGCTCTCATGATGTTGGAACTCTCAGAGATGTTACCCTTGGTGAGCAATCAAAACAATACGACGGATTAGGGACTCCTATTAGGGTTGGGAATGACTTGGTTTCTACTTCTACAAGTGCTAAGAGGTCTCCTCATTTTGATGTGGCAAAGTTAGGTTCAATGAGTTGCTCCAGGAAAACCCCAAGGAGAACCACACCTCCAGATCCCTCTGGAGAATTGGCAAGCAATTTACGCAGCAGCCCCATGATGAACATAGGCATGTACAACGTGAGTGAAGGTTTTGGCATCTCTTCCTTCAACATAGAACAAGCTAAAGATGAAAGTGACTTTAGCGGAGTCAAAACTCCTTCCAAGGAAACTGATGTGCTTCCTGAGGCAGATCAAAGCGGTACCACCTTACCTGAAAAGAGGAAAATTGATGTTTCTTCAGGTAGTTCCAAAATACAAAAGACGAGTCACAACTCAAAGGCAATGATATCTGAAGGTTCATTGGTAGCAAATCGAAGCGAAATTTTTGAACCTGCATCTAAAACAGATGTTCACATTGAGATAAAAAATCAAGTTTCACCTGGCAATGATGCCCGCTATTTGAATGACACTGCTGCCCAGAACTCCCCTGCTACTGTTTCAACAAGGTTGTTGGCAAGTTTTGACAGGAAATCAGTGACACCGGCTACACCTGTCTCCAAAACTTTAACCTCAGAGATTAGGGAAGATGAGAATGACGAGGAAGAACTTCAAGCACCTTTATTTGGCTCAGAAAAGGCCAACGTAACAAGTAGATCTGACAAAACAGATGCTTGTATGAGCAGTGCAAAAGATGCCATTGGTGAAGCTTGTGAACCAGAGGATAAGGTGCCGAACATTGGGGTTTCGTCTCCTACAACCCAGAGATCAGAGACACACAAATCCGATGGCTCTGCTAACTTGGAATTGCTCAAAGGACGAAGTGTTGAGAAACATTTGAAGCCAGTAAGAAGTAAGATGCTGGCAAAGAAGTTTTTGGGTTCTAAGAAAAGGTTAGGGAAAGGGACTACTGCAAATCAGAAAGGCTCTATTTACTTGAATAATAGTACCTCACAAAATGATGCTGTTACATGTTCAATTGGGGGGAAAGAGACAACAGACTACAGCTTCGTAAATTCTAAGGAGCTTGAGACCAATATAGTTACTGTCATGGAGGCGGAAACAAAGGATACTCAACAATCTGGAAATGAAGACGATAACAAGTCTGAATTCATGGATGATGAAACTGAGGCTCCAGAGGACAAGGAAGAAAATGAGCCTGAGGTTGCAGCTGTTGAAGAGAAGCATGCAGAAATTGAACCAGAAGAGAAATTCGAAGATGTGCAACAAGTAATAAATAACGAAGACATCAGCATGGCTGGTAAGGATGAGCGTGCTATGGCATCTGACAACACTACAGATGAAAGTGAACAAAAAAGGGCAGTTTGTGGCAAGAAATCTGAGGTGGTGGAACCAACACATGTAAAGAATGGTTCGAAGGAGAGAATAACTAAAGTGACAAAACGCCCTTCAGGCAAGACTAAGAAAAAGATTGTTCCTTCTGTCACGAAGACAACAAATTCCAACAGAGCTGCTAATGAAAAGGTAATGAGTGAAAGAGATAATGAGAAGATACAAGGGAAGAAGAAAGAATGTATTCCACATTTAGCAGGTAAAGCAAAGGGAACTAAATATGTGAATAAGTTGCAGAACACCTTGGAATTGGAGAAGGAGAATAGGCCGATTGACTCTGGACATACGAGTGTGAATCGTGGTAAAAAGGAAGTGGAAAAAGTGGCTTCTAGTAAAGTCCATATTAAGATTGATTCGAAGGCTGATGAATCAGATCTGCAGTCAAATACAGTGGAACGTGGTTTGAAGACCAATCCTGTTTGGTTTATACTGACTGGGCATAAGTTACAAAGAAAGGAGTTTCAGCAGGTCATTAGGCGCCTGAAAGGAAGAGTGTGTAGAGATTCTCACCACTGGTCATATCAGGCAACACATTTTATTGTCCCAGATCGTTTAGGCAGAACGGAGAAGTTTTTTGCAGCTGCTGCATCTGGAAGGTGGATATTGAAGATAGATTATTTAACTGACAGCAATCAGGCAGGAAGATTCTTGGCAGAAGAGCCTTACGAATGGCATAAGAATGGCCTAAGCGAAGATGGAGCAATTAATTTAGAAGCTCCAAGGAAGTGGCGCCTCTTGAGGGAGAGAACTGGTCATGGTGCTTTCCATGGAATGCGCATCATCATATATGGAGATTGCATTGCCCCATCTTTGGATACTCTGAAGCGTGTTGTGAAGGCTGGAGACGGGACCATTTTAGCAACTTCTCCCCCTTACAGTCGCTTTCTGGAATCGGGGGTTGACTTTGCAATTGTCAGTCCTGGCATGCCACGCGTTGATGTGTGGGTTCAAGAGTTCATAAGGCATGAAATACCATGTGTTGTAGCTGATTACTTGGTGGAGTATGTGTGCAAGCCTGGTTACTCTCTTGAGAGACATGTTCAATATAACACTCATGCTTGGGCCGAAAAGTCGTTTAAAAATATGGCTAATCGCTTGGAGGAAATTACGGAGGAAGTGTCTCCGCAGAAAGACCATGGCGATGAAGATACACCATGCCAAGTTTGTGGGTCCCGTGAAAGAGAAGAGGTAATGCTGATTTGTGGTGATGAAAGTGGTTCCACAGGCTGTGGTGTTGGAACCCATATTGATTGCTGTGATCCTCCACTTGAATGTGTACCAGAGGAAGACTGGTTCTGCCCCAAGTGTATTCTGGCTAAAAATAGCAAGAATTCCCAACAAAACAACAGGAAAGGAGAAGTGAGTGATTCTTCTTTGAATGCTATCTTGTAA

Network for GWHGAAZE009947

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12738.8	PTCB-BRCT	129	202	2.70E-14
PF00533.27	BRCT	955	1020	2.50E-05

Protein Sequence

>GWHPAAZE009953
MLEANQGSPFDHQSKTFRGVRFILLGFDPIKRSEVPLSLSLLFIRGVVSKLLDGGGVDVGQYCPNCTHVIVDKLVYDEPVCVAARSDGKILVNTLWVEHSFEVGMPVDASNIMYRPLKGLTGIPGAKSLIVCLTGYQRQDREDIMVFAIALSYNTMVGLMGANFSKPLVANKVTHLVCYKFEGEKYELAKKMKKIKLVNHRWLEDWYTLAFLKAWEIRPEAEYDKSTYELEMMEAEAKDSEEETEGIATKQCGEEATTPHQIQVSKPEVSRNPLDSSASKRLLNVGNTNHKVPVIEKTRSDQAPYLHKLHNNNHELLGSHDVGTLRDVTLGEQSKQYDGLGTPIRVGNDLVSTSTSAKRSPHFDVAKLGSMSCSRKTPRRTTPPDPSGELASNLRSSPMMNIGMYNVSEGFGISSFNIEQAKDESDFSGVKTPSKETDVLPEADQSGTTLPEKRKIDVSSGSSKIQKTSHNSKAMISEGSLVANRSEIFEPASKTDVHIEIKNQVSPGNDARYLNDTAAQNSPATVSTRLLASFDRKSVTPATPVSKTLTSEIREDENDEEELQAPLFGSEKANVTSRSDKTDACMSSAKDAIGEACEPEDKVPNIGVSSPTTQRSETHKSDGSANLELLKGRSVEKHLKPVRSKMLAKKFLGSKKRLGKGTTANQKGSIYLNNSTSQNDAVTCSIGGKETTDYSFVNSKELETNIVTVMEAETKDTQQSGNEDDNKSEFMDDETEAPEDKEENEPEVAAVEEKHAEIEPEEKFEDVQQVINNEDISMAGKDERAMASDNTTDESEQKRAVCGKKSEVVEPTHVKNGSKERITKVTKRPSGKTKKKIVPSVTKTTNSNRAANEKVMSERDNEKIQGKKKECIPHLAGKAKGTKYVNKLQNTLELEKENRPIDSGHTSVNRGKKEVEKVASSKVHIKIDSKADESDLQSNTVERGLKTNPVWFILTGHKLQRKEFQQVIRRLKGRVCRDSHHWSYQATHFIVPDRLGRTEKFFAAAASGRWILKIDYLTDSNQAGRFLAEEPYEWHKNGLSEDGAINLEAPRKWRLLRERTGHGAFHGMRIIIYGDCIAPSLDTLKRVVKAGDGTILATSPPYSRFLESGVDFAIVSPGMPRVDVWVQEFIRHEIPCVVADYLVEYVCKPGYSLERHVQYNTHAWAEKSFKNMANRLEEITEEVSPQKDHGDEDTPCQVCGSREREEVMLICGDESGSTGCGVGTHIDCCDPPLECVPEEDWFCPKCILAKNSKNSQQNNRKGEVSDSSLNAIL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10728	TOPBP1	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.191
	SRR3591706	second leaf	2.651
	SRR3591707	mature leaf	1.417
	SRR3591708	Shoot apex	8.014
	SRR3591709	Stem	2.702
	SRR3591710	White floral bud	2.389
	SRR3591711	White flower	3.105
	SRR3591712	Green floral bud	3.312
	SRR3591713	Yellow flower	1.911
SRP173429	SRR8316895	Juvenile bud stage	5.034
	SRR8316896	Juvenile bud stage	6.616
	SRR8316897	Juvenile bud stage	3.529
	SRR8316894	Third green stage	2.688
	SRR8316900	Third green stage	6.609
	SRR8316901	Third green stage	5.696
	SRR8316898	Complete white stage	1.059
	SRR8316899	Complete white stage	5.636
	SRR8316903	Complete white stage	3.100
	SRR8316902	Silver flowering stage	2.186
	SRR8316904	Silver flowering stage	3.486
	SRR8316905	Silver flowering stage	1.540
	SRR8316906	Gold flowering stage	3.441
	SRR8316907	Gold flowering stage	3.119
	SRR8316908	Gold flowering stage	3.356
SRP132670	SRR6706286	Control	4.342
	SRR6706287	Light intensity 50%	4.628
	SRR6706288	Light intensity 20%	5.200
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.996
	CNS0095593	Slightly white alabastrum(diploid) 2	4.734
	CNS0095594	Slightly white alabastrum(diploid) 3	4.439
	CNS0095595	Whole white alabastrum(diploid) 2	4.440
	CNS0095596	Whole white alabastrum(diploid) 3	3.684
	CNS0095597	Whole white alabastrum(diploid) 4	3.910
	CNS0095598	Silvery flower (diploied) 1	7.670
	CNS0095599	Silvery flower (diploied) 2	6.683
	CNS0095600	Silvery flower (diploied) 3	6.900
	CNS0095601	Golden flower (diploid) 1	7.676
	CNS0095602	Golden flower (diploid) 2	8.971
	CNS0095603	Golden flower (diploid) 3	9.174
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.272
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.518
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.198
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.337
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.635
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.337
	CNS0095610	Silvery flower (tetraploid) 1	7.586
	CNS0095611	Silvery flower (tetraploid) 2	11.176
	CNS0095612	Silvery flower (tetraploid) 3	7.803
	CNS0095613	Golden flower (tetraploid) 1	3.634
	CNS0095614	Golden flower (tetraploid) 2	6.624
	CNS0095615	Golden flower (tetraploid) 3	3.390
CRA001975	CRR073297	Stem 1	8.467
	CRR073298	Stem 2	8.082
	CRR073299	Stem 3	6.646
	CRR073300	Leaf 1	7.099
	CRR073301	Leaf 2	6.007
	CRR073302	Leaf 3	3.583
	CRR073303	Juvenile bud 1	4.755
	CRR073304	Juvenile bud 2	2.921
	CRR073305	Juvenile bud 3	5.466
	CRR073306	Third green 1	0.566
	CRR073307	Third green 2	0.563
	CRR073308	Third green 3	1.048
	CRR073309	Second white 1	0.628
	CRR073310	Second white 2	0.927
	CRR073311	Second white 3	0.508
	CRR073312	Silver flowering 1	0.516
	CRR073313	Silver flowering 2	0.528
	CRR073314	Silver flowering 3	0.944
	CRR073315	Gold flowering 1	2.191
	CRR073316	Gold flowering 2	2.588
	CRR073317	Gold flowering 3	1.752
	CRR073318	Tawny withering 1	5.301
	CRR073319	Tawny withering 2	3.989
	CRR073320	Tawny withering 3	3.496