Gene detail

Detail information of GWHGAAZE009920

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011041962.1	PREDICTED: endoglucanase 17 [Populus euphratica]
Swissprot	tr\|O81416\|GUN17_ARATH	Endoglucanase 17 (Precursor)
trEMBL	tr\|B9GSC6\|B9GSC6_POPTR	Endoglucanase {ECO:0000256\|RuleBase:RU361166}
TAIR10	AT4G02290.1	glycosyl hydrolase 9B13

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	119857282	119859679	+
GWHAAZE00000002	mRNA	119857282	119859679	+
GWHAAZE00000002	exon	119857282	119857533	+
GWHAAZE00000002	exon	119857663	119857869	+
GWHAAZE00000002	exon	119857982	119858182	+
GWHAAZE00000002	exon	119858300	119858392	+
GWHAAZE00000002	exon	119858522	119858656	+
GWHAAZE00000002	exon	119858848	119858959	+
GWHAAZE00000002	exon	119859041	119859204	+
GWHAAZE00000002	exon	119859347	119859679	+
GWHAAZE00000002	CDS	119857282	119857533	+
GWHAAZE00000002	CDS	119857663	119857869	+
GWHAAZE00000002	CDS	119857982	119858182	+
GWHAAZE00000002	CDS	119858300	119858392	+
GWHAAZE00000002	CDS	119858522	119858656	+
GWHAAZE00000002	CDS	119858848	119858959	+
GWHAAZE00000002	CDS	119859041	119859204	+
GWHAAZE00000002	CDS	119859347	119859679	+

Transcript Sequence
>GWHTAAZE009932 ATGGCTTCTTCCCCTGTTTTCTCTATCTTACTTGCTCTGTTTTCCTTCACTTCCCTTCTCCTCCTCTGCAATGGCTTCCCTGCACAGCACAAATCTCCCAACCACCACCATCGCTTTGCTTCTCACAACTACAAAGATGCCCTCACTAAATCTATTCTCTTCTTTGAAGGCCAAAGATCAGGGAAGCTCCCTTCTAACCAGAGGGTTACTTGGAGAAGAGACTCTGGTCTCTCCGATGGCTCTGCAATGCACGTTGATTTGGTAGGAGGGTATTATGATGCAGGGGACAATGTGAAGTTTGGGTTCCCCATGGCATTCACCACCACAATGCTGTCATGGAGTGTGCTTGAATTTGGGGGTTTGATGAAGGGTGAGTTGCAGAATGCTAAAGAAGCCATTCGTTGGGGTACTGACTATCTTCTCAAAGCTACTTGCCAACCAAGCACCATTTATGTTCAGGTGGGTGATGCAAACAAAGACCATGCTTGTTGGGAGAGGCCAGAAGATATGGACACACCAAGAACTGTGATAAAGATAGACAAGAATACCCCTGGAACAGAAGTAGCAGCTGAAACTGCTGCTGCTCTTGCTGCTGCTTCTTTGGTCTTTAGAAAAACTGACCCCACTTACTCCAAGCTTCTTGTCAAGAGGGCCATTAGTGTGTTTGAGTTTGCTGATAAGTATAGAGGTGCTTACAGTAATAGCTTGAAAAGATTTGTGTGCCCCTTCTATTGTGATTACTCTGGATTTCAGGATGAGTTGTTGTGGGGTGCTGCTTGGTTGCATAGAGCCACAAAGTACCCAACATACCTCAACTACATTCAAACAAATGGGCAGACACTTGGAGCTGATGAGACTGATAATACCTTTGGGTGGGATAACAAGCATGCATTTCTTGTCCAAAAGGTCCAGTCTCTCCACGATTACAAGGGTCATGCAGATAATTACATCTGTTCTCTCATTCCAGGCACCCCGTCCTCTTCTGCTCAGTATACCCCAGGTGGGCTTCTTTTTAAGATGGATGACAGTAACATGCAGTATGTGACCTCCACCTCTTTCTTGCTGGTAACATATGCCAAGTACTTAACCTCATCCCACAAGGTTGTCAATTGTGGTGGAGCTGTTGTTACCCCCAAAAGACTCAGAACCATTGCCAAGAAACAAGTGGACTACCTCCTAGGAGATAATCCCTTAAAAATGTCATACATGGTTGGGTATGGTCCTAGGTACCCACAAAGGATACACCACAGGGGTTCATCCCTACCGTCAGTTGCCGCACACCCAGCTAAGATCCAGTGCTCATCGGGGTTCGGTATAATGAAATCGGAGTCCCCAAATCCTAACATTCTGGTTGGTGCTGTGGTTGGAGGGCCAGATGAGCACGATCGGTTCCCAGATCAGCGGTCGGATTACTATCAGTCGGAGCCGGCAACTTACATTAACGCGCCCCTTGTTGGATCCTTGGCTTATCTTGCTCACTCCTTTGGCCAACTTTAA

Network for GWHGAAZE009920

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00759.20	Glyco_hydro_9	44	487	4.00E-144

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01179	E3.2.1.4	Metabolic pathways	map01100
		Starch and sucrose metabolism	map00500
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	292.470
	SRR3591706	second leaf	175.136
	SRR3591707	mature leaf	53.359
	SRR3591708	Shoot apex	401.628
	SRR3591709	Stem	11.211
	SRR3591710	White floral bud	154.012
	SRR3591711	White flower	10.538
	SRR3591712	Green floral bud	266.448
	SRR3591713	Yellow flower	0.165
SRP173429	SRR8316895	Juvenile bud stage	91.881
	SRR8316896	Juvenile bud stage	76.249
	SRR8316897	Juvenile bud stage	43.967
	SRR8316894	Third green stage	46.142
	SRR8316900	Third green stage	128.698
	SRR8316901	Third green stage	123.071
	SRR8316898	Complete white stage	28.058
	SRR8316899	Complete white stage	193.627
	SRR8316903	Complete white stage	52.364
	SRR8316902	Silver flowering stage	0.212
	SRR8316904	Silver flowering stage	0.436
	SRR8316905	Silver flowering stage	0.298
	SRR8316906	Gold flowering stage	0.053
	SRR8316907	Gold flowering stage	0.328
	SRR8316908	Gold flowering stage	0.490
SRP132670	SRR6706286	Control	167.195
	SRR6706287	Light intensity 50%	217.728
	SRR6706288	Light intensity 20%	221.765
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	105.385
	CNS0095593	Slightly white alabastrum(diploid) 2	115.705
	CNS0095594	Slightly white alabastrum(diploid) 3	61.836
	CNS0095595	Whole white alabastrum(diploid) 2	82.347
	CNS0095596	Whole white alabastrum(diploid) 3	87.896
	CNS0095597	Whole white alabastrum(diploid) 4	67.480
	CNS0095598	Silvery flower (diploied) 1	26.502
	CNS0095599	Silvery flower (diploied) 2	20.730
	CNS0095600	Silvery flower (diploied) 3	11.064
	CNS0095601	Golden flower (diploid) 1	14.832
	CNS0095602	Golden flower (diploid) 2	9.544
	CNS0095603	Golden flower (diploid) 3	10.821
	CNS0095604	Slightly white alabastrum(tetraploid) 1	124.806
	CNS0095605	Slightly white alabastrum(tetraploid) 2	95.781
	CNS0095606	Slightly white alabastrum(tetraploid) 3	298.244
	CNS0095607	Whole white alabastrum(tetraploid) 1	56.519
	CNS0095608	Whole white alabastrum(tetraploid) 2	38.561
	CNS0095609	Whole white alabastrum(tetraploid) 3	111.549
	CNS0095610	Silvery flower (tetraploid) 1	1.394
	CNS0095611	Silvery flower (tetraploid) 2	10.742
	CNS0095612	Silvery flower (tetraploid) 3	4.601
	CNS0095613	Golden flower (tetraploid) 1	0.272
	CNS0095614	Golden flower (tetraploid) 2	2.120
	CNS0095615	Golden flower (tetraploid) 3	0.887
CRA001975	CRR073297	Stem 1	244.802
	CRR073298	Stem 2	242.735
	CRR073299	Stem 3	286.212
	CRR073300	Leaf 1	329.488
	CRR073301	Leaf 2	229.923
	CRR073302	Leaf 3	288.422
	CRR073303	Juvenile bud 1	257.368
	CRR073304	Juvenile bud 2	275.585
	CRR073305	Juvenile bud 3	400.970
	CRR073306	Third green 1	11.786
	CRR073307	Third green 2	12.938
	CRR073308	Third green 3	10.550
	CRR073309	Second white 1	0.223
	CRR073310	Second white 2	0.322
	CRR073311	Second white 3	0.409
	CRR073312	Silver flowering 1	0.121
	CRR073313	Silver flowering 2	0.247
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	20.275
	CRR073316	Gold flowering 2	30.634
	CRR073317	Gold flowering 3	57.528
	CRR073318	Tawny withering 1	3.160
	CRR073319	Tawny withering 2	4.746
	CRR073320	Tawny withering 3	3.075