Detail information of GWHGAAZE009908


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002268231.10PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog A [Vitis vinifera]
trEMBLtr|D7U2A7|D7U2A7_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI36873.3}
TAIR10AT4G02400.10U3 ribonucleoprotein (Utp) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene119638211119649112-
GWHAAZE00000002mRNA119638211119649112-
GWHAAZE00000002exon119648753119649112-
GWHAAZE00000002exon119648076119648226-
GWHAAZE00000002exon119642057119642568-
GWHAAZE00000002exon119641664119641885-
GWHAAZE00000002exon119641251119641571-
GWHAAZE00000002exon119640791119641144-
GWHAAZE00000002exon119640627119640707-
GWHAAZE00000002exon119640448119640549-
GWHAAZE00000002exon119639969119640340-
GWHAAZE00000002exon119639233119639364-
GWHAAZE00000002exon119638211119638629-
GWHAAZE00000002CDS119648753119649112-
GWHAAZE00000002CDS119648076119648226-
GWHAAZE00000002CDS119642057119642568-
GWHAAZE00000002CDS119641664119641885-
GWHAAZE00000002CDS119641251119641571-
GWHAAZE00000002CDS119640791119641144-
GWHAAZE00000002CDS119640627119640707-
GWHAAZE00000002CDS119640448119640549-
GWHAAZE00000002CDS119639969119640340-
GWHAAZE00000002CDS119639233119639364-
GWHAAZE00000002CDS119638468119638629-
GWHAAZE00000002three_prime_UTR119638211119638467-
Transcript Sequence

Network for GWHGAAZE009908

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04615.14Utp141298833.30E-192
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14567UTP14 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.359
SRR3591706second leaf15.504
SRR3591707mature leaf13.917
SRR3591708Shoot apex23.680
SRR3591709Stem20.564
SRR3591710White floral bud22.353
SRR3591711White flower38.288
SRR3591712Green floral bud27.594
SRR3591713Yellow flower24.992
SRP173429 SRR8316895Juvenile bud stage 17.377
SRR8316896Juvenile bud stage 22.260
SRR8316897Juvenile bud stage 10.613
SRR8316894Third green stage 10.736
SRR8316900Third green stage 23.674
SRR8316901Third green stage 22.999
SRR8316898Complete white stage 6.648
SRR8316899Complete white stage 22.453
SRR8316903Complete white stage 15.631
SRR8316902Silver flowering stage12.921
SRR8316904Silver flowering stage21.142
SRR8316905Silver flowering stage8.148
SRR8316906Gold flowering stage 24.611
SRR8316907Gold flowering stage 29.205
SRR8316908Gold flowering stage 28.682
SRP132670SRR6706286Control9.856
SRR6706287Light intensity 50%10.994
SRR6706288Light intensity 20%11.180
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.073
CNS0095593Slightly white alabastrum(diploid) 217.035
CNS0095594Slightly white alabastrum(diploid) 317.217
CNS0095595Whole white alabastrum(diploid) 215.303
CNS0095596Whole white alabastrum(diploid) 313.448
CNS0095597Whole white alabastrum(diploid) 415.511
CNS0095598Silvery flower (diploied) 120.939
CNS0095599Silvery flower (diploied) 217.424
CNS0095600Silvery flower (diploied) 324.640
CNS0095601Golden flower (diploid) 115.131
CNS0095602Golden flower (diploid) 220.956
CNS0095603Golden flower (diploid) 322.041
CNS0095604Slightly white alabastrum(tetraploid) 116.894
CNS0095605Slightly white alabastrum(tetraploid) 215.998
CNS0095606Slightly white alabastrum(tetraploid) 331.050
CNS0095607Whole white alabastrum(tetraploid) 112.413
CNS0095608Whole white alabastrum(tetraploid) 211.744
CNS0095609Whole white alabastrum(tetraploid) 322.180
CNS0095610Silvery flower (tetraploid) 127.194
CNS0095611Silvery flower (tetraploid) 220.823
CNS0095612Silvery flower (tetraploid) 320.596
CNS0095613Golden flower (tetraploid) 115.764
CNS0095614Golden flower (tetraploid) 221.541
CNS0095615Golden flower (tetraploid) 317.245
CRA001975CRR073297Stem 117.799
CRR073298Stem 218.731
CRR073299Stem 313.752
CRR073300Leaf 115.429
CRR073301Leaf 215.169
CRR073302Leaf 39.570
CRR073303Juvenile bud 110.658
CRR073304Juvenile bud 29.225
CRR073305Juvenile bud 310.099
CRR073306Third green 14.907
CRR073307Third green 24.937
CRR073308Third green 35.437
CRR073309Second white 13.335
CRR073310Second white 25.502
CRR073311Second white 36.423
CRR073312Silver flowering 12.922
CRR073313Silver flowering 22.676
CRR073314Silver flowering 35.181
CRR073315Gold flowering 14.172
CRR073316Gold flowering 28.805
CRR073317Gold flowering 32.161
CRR073318Tawny withering 112.703
CRR073319Tawny withering 213.757
CRR073320Tawny withering 312.865