Gene detail

Detail information of GWHGAAZE009796

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002277634.1	PREDICTED: DNA repair helicase UVH6 [Vitis vinifera]
Swissprot	tr\|Q8W4M7\|ERCC2_ARATH	DNA repair helicase UVH6
trEMBL	tr\|F6HQ82\|F6HQ82_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56839.1}
TAIR10	AT1G03190.2	RAD3-like DNA-binding helicase protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	117443761	117451553	+
GWHAAZE00000002	mRNA	117443761	117451553	+
GWHAAZE00000002	exon	117443761	117444057	+
GWHAAZE00000002	exon	117444577	117444857	+
GWHAAZE00000002	exon	117445771	117445853	+
GWHAAZE00000002	exon	117445954	117446357	+
GWHAAZE00000002	exon	117446649	117446842	+
GWHAAZE00000002	exon	117446983	117447163	+
GWHAAZE00000002	exon	117447380	117447504	+
GWHAAZE00000002	exon	117448058	117448147	+
GWHAAZE00000002	exon	117448588	117448666	+
GWHAAZE00000002	exon	117448757	117448833	+
GWHAAZE00000002	exon	117450925	117451033	+
GWHAAZE00000002	exon	117451434	117451553	+
GWHAAZE00000002	CDS	117443761	117444057	+
GWHAAZE00000002	CDS	117444577	117444857	+
GWHAAZE00000002	CDS	117445771	117445853	+
GWHAAZE00000002	CDS	117445954	117446357	+
GWHAAZE00000002	CDS	117446649	117446842	+
GWHAAZE00000002	CDS	117446983	117447163	+
GWHAAZE00000002	CDS	117447380	117447504	+
GWHAAZE00000002	CDS	117448058	117448147	+
GWHAAZE00000002	CDS	117448588	117448666	+
GWHAAZE00000002	CDS	117448757	117448833	+
GWHAAZE00000002	CDS	117450925	117451033	+
GWHAAZE00000002	CDS	117451434	117451553	+

Transcript Sequence
>GWHTAAZE009808 ATGGAGAAAACCCTAGCCGAACTCAAATTACTCCACCGTTACCAGCTCCAAAACCTAGGTCCCTCCGCTCGAATGCTTGCCCTAGGCCTTTCTTCCAGAAAGAATTTGTGTATTAACCCCGCCGTTGTGTCGGCCGAGAATCGTGATTCTGTTGATGCCGCTTGTCGAAAGCTCACTGCTAGTTGGGTCAGAGCTCTTGCCGTTGAAAACCCTAACGTTCCGACTTGCTCTTTTTTCGAGAATTATGAGAAGGCTGGTTCTGATGCTGTTTTGCCTCCTGGAGTTTATACCTTGCAGGATCTTAGGGCTTTTGGAAAGGAAAAAGGATGGTGCCCATATTTTTTAGCACGTCATATGGTACAGCTTGCAAATGTAGTGGTTTATAGTTATCAATACCTTCTTGATCCTAAGGTTGCTGGGATCATATCAAAGGAGATGCAAAGAGAGTCTGTTGTGGTGTTCGACGAGGCTCACAATATCGATAATGTGTGTATTGAGGCTCTCAGTGTCAGCGTGCGGAGGCAGACACTTGAAGGGGCAACAAGGAATCTCAATAAGATGGCTCTGGAGATTGATAGGTTTAAGGCCACTGATGCTGGTAGATTGCGTGCTGAATACAACCGGCTTGTTGACGGTTTAGCACAAAGAGGAAACCTGCCTCTTACGGACACTTGGCTCTCAAACCCTATCTTGCCCGATGATATCCTGAAGGAGGCGGTGCCTGGAAATATACGGCGGGCAGAGCATTTCTTATCTGTTTTACGAAGATTAGTCCAGTATCTTAAAGGGCGTTTAGAAACTGAGAATGTTGAAAAGGAAGGCCCTGTTACCTTTGTTGGATCTATAAATTCGCAGGTTGGGATTGACCAGAAAATGTTGAAGTTTTGTTATGATCGCCTGCACTCGTTGATGTTAACACTGGAGATAACCGACACAGATGAATTTTTGCACATCCAAACAATCTGCGACTTTGCTACTCTTGTGGGAACATACACTCGGGGTTTTTCAATCATTATTGAGCCTTTTGACGAGAGGATGCCACATATTCCGGATCCCGTGTTGCAGCTTAGCTGCCATGATGCTTCACTTGCCATAAAGCCCGTCTTTGAACGTTTCCAATCGGTTGTGATCACTTCAGGAACTTTGAGCCCTATTGATCTCTACCCTCGTCTTCTTAATTTTAATCCAGTAGTTAGTCGAAGCTTTACAATGTCCTTGACGAGGGATTGCATATGCCCAATGGTGCTCACTCGTGGGAGTGATCAGCTTCCTGTCAGCACAAAATTTGACCTGAGAAGTGATCCTGGCGTTGAAAGAAATTACGGGAGGCTTTTGCTAGAGATGGTGTCTGTTGTCCCTGATGGGATTGTGTGCTTCTTTGTCAGTTACTCATACATGGATGGAATAGTAAATAGTTGGAATGAACTAGGAATTTTGAAGGATATAATGCAACATAAACTCGTCTTCATTGAGACCCAGGATGTTGTTGAGACTACTTTGGCTCTGGACAACTATCGCAGGGCTTGTGATTGTGGGAGAGGTGCTGTCTTTTTTTCTGTTGCAAGGGGGAAAGTAGCAGAAGGTATAGACTTCGATAGGCATTACGGAAGACTTGTGATCATGTTTGGTGTTCCTTTTCAGTACACCCTAAGCAGAATATTGCTTGCTCGGCTAGAGTATTTGCGGGAGACTTTCCAGATAAAAGAAGGCGACTTTTTGACTTTTGATGCATTGAGGCAAGCTGCTCAGTGTGTTGGTCGTGTGATTCGTTCGAAGGCAGACTATGGAATGATGATTTTTGCTGACAAGAGGTACACCCGTCATGACAAGCGATCTAAGTTGCCGGGATGGATCCTCTCACATTTGCGTGATGCACATCTGAACTTGAGTACCGACATGGCTGTGCATATAGCAAGAGAGTTCTTACGGAAGATGGCTCAACCATATGATAAGACGGGTGGTAGCGGTAAGAAAACCCTTTTGTCACAGGAAGATTTGGAGAAGATGGGCTATGGCGGAATGAATGAAATGCTGTTTTAA

Network for GWHGAAZE009796

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06733.16	DEAD_2	1	177	4.00E-46
PF06777.12	HBB	191	333	4.50E-29
PF13307.7	Helicase_C_2	445	618	2.20E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10844	ERCC2, XPD	Basal transcription factors	map03022
K10844	ERCC2, XPD	Nucleotide excision repair	map03420

Gene Ontology

GO term	Ontology	Name
GO:0006139	biological_process	nucleobase-containing compound metabolic process
GO:0006289	biological_process	nucleotide-excision repair
GO:0005634	cellular_component	nucleus
GO:0003676	molecular_function	nucleic acid binding
GO:0004386	molecular_function	helicase activity
GO:0005524	molecular_function	ATP binding
GO:0016818	molecular_function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0003678	molecular_function	DNA helicase activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.162
	SRR3591706	second leaf	5.879
	SRR3591707	mature leaf	5.808
	SRR3591708	Shoot apex	11.307
	SRR3591709	Stem	9.982
	SRR3591710	White floral bud	8.203
	SRR3591711	White flower	9.817
	SRR3591712	Green floral bud	10.274
	SRR3591713	Yellow flower	8.132
SRP173429	SRR8316895	Juvenile bud stage	6.048
	SRR8316896	Juvenile bud stage	9.627
	SRR8316897	Juvenile bud stage	3.703
	SRR8316894	Third green stage	4.236
	SRR8316900	Third green stage	9.149
	SRR8316901	Third green stage	9.049
	SRR8316898	Complete white stage	2.645
	SRR8316899	Complete white stage	12.191
	SRR8316903	Complete white stage	6.130
	SRR8316902	Silver flowering stage	3.214
	SRR8316904	Silver flowering stage	5.997
	SRR8316905	Silver flowering stage	2.145
	SRR8316906	Gold flowering stage	6.689
	SRR8316907	Gold flowering stage	6.191
	SRR8316908	Gold flowering stage	7.170
SRP132670	SRR6706286	Control	8.559
	SRR6706287	Light intensity 50%	10.451
	SRR6706288	Light intensity 20%	11.654
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.027
	CNS0095593	Slightly white alabastrum(diploid) 2	5.209
	CNS0095594	Slightly white alabastrum(diploid) 3	4.240
	CNS0095595	Whole white alabastrum(diploid) 2	3.158
	CNS0095596	Whole white alabastrum(diploid) 3	3.600
	CNS0095597	Whole white alabastrum(diploid) 4	3.710
	CNS0095598	Silvery flower (diploied) 1	5.717
	CNS0095599	Silvery flower (diploied) 2	3.771
	CNS0095600	Silvery flower (diploied) 3	8.015
	CNS0095601	Golden flower (diploid) 1	3.914
	CNS0095602	Golden flower (diploid) 2	6.073
	CNS0095603	Golden flower (diploid) 3	7.834
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.815
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.833
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.970
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.028
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.217
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.025
	CNS0095610	Silvery flower (tetraploid) 1	9.015
	CNS0095611	Silvery flower (tetraploid) 2	8.627
	CNS0095612	Silvery flower (tetraploid) 3	5.485
	CNS0095613	Golden flower (tetraploid) 1	3.543
	CNS0095614	Golden flower (tetraploid) 2	8.245
	CNS0095615	Golden flower (tetraploid) 3	4.788
CRA001975	CRR073297	Stem 1	10.393
	CRR073298	Stem 2	9.035
	CRR073299	Stem 3	9.642
	CRR073300	Leaf 1	11.101
	CRR073301	Leaf 2	9.154
	CRR073302	Leaf 3	8.051
	CRR073303	Juvenile bud 1	7.243
	CRR073304	Juvenile bud 2	4.655
	CRR073305	Juvenile bud 3	10.092
	CRR073306	Third green 1	1.537
	CRR073307	Third green 2	1.330
	CRR073308	Third green 3	2.187
	CRR073309	Second white 1	2.197
	CRR073310	Second white 2	2.069
	CRR073311	Second white 3	1.548
	CRR073312	Silver flowering 1	1.227
	CRR073313	Silver flowering 2	2.308
	CRR073314	Silver flowering 3	1.984
	CRR073315	Gold flowering 1	1.991
	CRR073316	Gold flowering 2	6.218
	CRR073317	Gold flowering 3	3.013
	CRR073318	Tawny withering 1	4.808
	CRR073319	Tawny withering 2	4.907
	CRR073320	Tawny withering 3	6.881