Gene detail

Detail information of GWHGAAZE009738

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHN10698.1	1.98438E-69	hypothetical protein glysoja_019129 [Glycine soja]
Swissprot	tr\|C7AU21\|D27_ORYSJ	4E-51	Beta-carotene isomerase D27, chloroplastic (Precursor)
trEMBL	tr\|A0A059A6W0\|A0A059A6W0_EUCGR	1E-69	Uncharacterized protein {ECO:0000313\|EMBL:KCW49847.1}
TAIR10	AT1G03055.1	1E-38	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	116225757	116229882	+
GWHAAZE00000002	mRNA	116225757	116229882	+
GWHAAZE00000002	exon	116225757	116225898	+
GWHAAZE00000002	exon	116228397	116228445	+
GWHAAZE00000002	exon	116228551	116228657	+
GWHAAZE00000002	exon	116229280	116229372	+
GWHAAZE00000002	exon	116229467	116229882	+
GWHAAZE00000002	CDS	116225757	116225898	+
GWHAAZE00000002	CDS	116228397	116228445	+
GWHAAZE00000002	CDS	116228551	116228657	+
GWHAAZE00000002	CDS	116229280	116229372	+
GWHAAZE00000002	CDS	116229467	116229507	+
GWHAAZE00000002	three_prime_UTR	116229508	116229882	+

Transcript Sequence
>GWHTAAZE009750 ATGAAAAACGATAAGAGTGGATATGAAAGCTTGGTGGAGGCTGCAACAGCAACATCAAGGAAATTCAACCCTATCCAACAGCGCCAGCTTGTCATTCAAGCTCTTGACATGGCTTTTCCAAGTCCTATTATGTCCCTGGCAAAGTTCAATGGAGCAAGAGAGAAGAATGTGGTCTACATAAAGAAATGCAGGTTTTTGGAGGAGACCAACTGCGTTGGAATGTGCACCAACCTTTGTAAGATGCCGTCTCAAGCGTTCATTAAAGACTCCTTGGGTGTCCCAGTCAATATGGTCCCTAATTTTGATGATATGAGCTGTGAGATGATATTCGGTCAGGAACCTCCATTGCCAACTGATGACCCAGCATTTAAGCAACCATGCTACAAACTATGCAAGGCAAAGCAAAGGCACAGTGACATTTGCACAAACTAATCCAGAAGGATAAGAATAACTGAGGGGTTTCAATCAAATCCTTCTCTCATGATGACTAAACATCACACATCATTTTCATTGTAATGACTAGTGAAGCAGTAACTTGTTGAATTTTGCAACCCCCACCACACAAGCAAAAAGATTATACTTAAATTTACCACTTACAAATGTACTGATAGAACATAAAATGTTACATTTCTAAACATATATAGCAGGCCCTACAGATGGTCAATTCTTAATTTTACTAAAGGACCAAAGAATTATGATAGGAGGCAACAAGGTACTCTAGTGGTCATATTGTGACACCCAAGTTCAAAAGTATGACTCTGAGTTCTAACAGAATTTAGTAGCTTAATTGATATCAGAGATTTTTAA

Network for GWHGAAZE009738

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13225.7	DUF4033	48	116	4.70E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17911	DWARF27	Biosynthesis of secondary metabolites	map01110
K17911	DWARF27	Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.136
	SRR3591706	second leaf	1.491
	SRR3591707	mature leaf	2.643
	SRR3591708	Shoot apex	1.143
	SRR3591709	Stem	2.825
	SRR3591710	White floral bud	0.762
	SRR3591711	White flower	0.190
	SRR3591712	Green floral bud	1.362
	SRR3591713	Yellow flower	0.146
SRP173429	SRR8316895	Juvenile bud stage	36.013
	SRR8316896	Juvenile bud stage	116.369
	SRR8316897	Juvenile bud stage	22.425
	SRR8316894	Third green stage	17.733
	SRR8316900	Third green stage	2.897
	SRR8316901	Third green stage	5.153
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	1.517
	SRR8316903	Complete white stage	0.185
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.282
	SRR8316905	Silver flowering stage	0.087
	SRR8316906	Gold flowering stage	0.051
	SRR8316907	Gold flowering stage	0.121
	SRR8316908	Gold flowering stage	0.020
SRP132670	SRR6706286	Control	2.620
	SRR6706287	Light intensity 50%	3.413
	SRR6706288	Light intensity 20%	0.748
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.356
	CNS0095593	Slightly white alabastrum(diploid) 2	4.567
	CNS0095594	Slightly white alabastrum(diploid) 3	47.948
	CNS0095595	Whole white alabastrum(diploid) 2	4.470
	CNS0095596	Whole white alabastrum(diploid) 3	5.243
	CNS0095597	Whole white alabastrum(diploid) 4	4.466
	CNS0095598	Silvery flower (diploied) 1	0.552
	CNS0095599	Silvery flower (diploied) 2	0.332
	CNS0095600	Silvery flower (diploied) 3	0.174
	CNS0095601	Golden flower (diploid) 1	0.506
	CNS0095602	Golden flower (diploid) 2	0.180
	CNS0095603	Golden flower (diploid) 3	0.277
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.985
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.227
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.979
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.354
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.290
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.864
	CNS0095610	Silvery flower (tetraploid) 1	0.030
	CNS0095611	Silvery flower (tetraploid) 2	0.095
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.020
	CNS0095615	Golden flower (tetraploid) 3	0.044
CRA001975	CRR073297	Stem 1	120.223
	CRR073298	Stem 2	125.956
	CRR073299	Stem 3	217.816
	CRR073300	Leaf 1	1.002
	CRR073301	Leaf 2	1.295
	CRR073302	Leaf 3	0.997
	CRR073303	Juvenile bud 1	0.597
	CRR073304	Juvenile bud 2	0.700
	CRR073305	Juvenile bud 3	0.716
	CRR073306	Third green 1	0.014
	CRR073307	Third green 2	0.202
	CRR073308	Third green 3	0.383
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.376
	CRR073312	Silver flowering 1	0.081
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.017
	CRR073315	Gold flowering 1	8.176
	CRR073316	Gold flowering 2	10.484
	CRR073317	Gold flowering 3	5.362
	CRR073318	Tawny withering 1	0.834
	CRR073319	Tawny withering 2	1.090
	CRR073320	Tawny withering 3	1.841