Detail information of GWHGAAZE009731


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP21376.15.0911E-155hypothetical protein JCGZ_21847 [Jatropha curcas]
Swissprottr|O22765|TRPA1_ARATH1E-148Tryptophan synthase alpha chain
trEMBLtr|A0A067JC03|A0A067JC03_JATCU2E-155Uncharacterized protein {ECO:0000313|EMBL:KDP21376.1}
TAIR10AT4G02610.12E-112Aldolase-type TIM barrel family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene116062400116066441-
GWHAAZE00000002mRNA116062400116066441-
GWHAAZE00000002exon116062400116062534-
GWHAAZE00000002exon116062885116062944-
GWHAAZE00000002exon116063281116063358-
GWHAAZE00000002exon116063452116063529-
GWHAAZE00000002exon116064231116064307-
GWHAAZE00000002exon116064899116065007-
GWHAAZE00000002exon116065755116065820-
GWHAAZE00000002exon116065899116066045-
GWHAAZE00000002exon116066427116066441-
GWHAAZE00000002CDS116066427116066441-
GWHAAZE00000002CDS116065899116066045-
GWHAAZE00000002CDS116065755116065820-
GWHAAZE00000002CDS116064899116065007-
GWHAAZE00000002CDS116064231116064307-
GWHAAZE00000002CDS116063452116063529-
GWHAAZE00000002CDS116063281116063358-
GWHAAZE00000002CDS116062885116062944-
GWHAAZE00000002CDS116062400116062534-
Transcript Sequence

Network for GWHGAAZE009731

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00290.21Trp_syntA72521.90E-92
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01695trpA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Glycine, serine and threonine metabolismmap00260
Phenylalanine, tyrosine and tryptophan biosynthesismap00400

Gene Ontology

GO term OntologyName
GO:0006568biological_processtryptophan metabolic process
GO:0004834molecular_functiontryptophan synthase activity
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.564
SRR3591706second leaf9.577
SRR3591707mature leaf6.821
SRR3591708Shoot apex24.893
SRR3591709Stem9.095
SRR3591710White floral bud4.352
SRR3591711White flower4.882
SRR3591712Green floral bud8.913
SRR3591713Yellow flower2.972
SRP173429 SRR8316895Juvenile bud stage 14.593
SRR8316896Juvenile bud stage 20.077
SRR8316897Juvenile bud stage 3.243
SRR8316894Third green stage 9.666
SRR8316900Third green stage 18.843
SRR8316901Third green stage 20.014
SRR8316898Complete white stage 1.962
SRR8316899Complete white stage 14.627
SRR8316903Complete white stage 3.308
SRR8316902Silver flowering stage0.376
SRR8316904Silver flowering stage0.302
SRR8316905Silver flowering stage0.187
SRR8316906Gold flowering stage 0.494
SRR8316907Gold flowering stage 1.272
SRR8316908Gold flowering stage 0.312
SRP132670SRR6706286Control16.138
SRR6706287Light intensity 50%17.629
SRR6706288Light intensity 20%18.234
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.759
CNS0095593Slightly white alabastrum(diploid) 212.948
CNS0095594Slightly white alabastrum(diploid) 311.795
CNS0095595Whole white alabastrum(diploid) 27.675
CNS0095596Whole white alabastrum(diploid) 37.836
CNS0095597Whole white alabastrum(diploid) 47.178
CNS0095598Silvery flower (diploied) 18.178
CNS0095599Silvery flower (diploied) 29.561
CNS0095600Silvery flower (diploied) 31.071
CNS0095601Golden flower (diploid) 16.778
CNS0095602Golden flower (diploid) 21.096
CNS0095603Golden flower (diploid) 31.380
CNS0095604Slightly white alabastrum(tetraploid) 14.770
CNS0095605Slightly white alabastrum(tetraploid) 24.955
CNS0095606Slightly white alabastrum(tetraploid) 37.328
CNS0095607Whole white alabastrum(tetraploid) 12.458
CNS0095608Whole white alabastrum(tetraploid) 21.072
CNS0095609Whole white alabastrum(tetraploid) 33.370
CNS0095610Silvery flower (tetraploid) 10.790
CNS0095611Silvery flower (tetraploid) 21.027
CNS0095612Silvery flower (tetraploid) 30.750
CNS0095613Golden flower (tetraploid) 10.233
CNS0095614Golden flower (tetraploid) 20.213
CNS0095615Golden flower (tetraploid) 30.085
CRA001975CRR073297Stem 117.623
CRR073298Stem 220.874
CRR073299Stem 36.005
CRR073300Leaf 119.727
CRR073301Leaf 223.281
CRR073302Leaf 312.185
CRR073303Juvenile bud 19.721
CRR073304Juvenile bud 25.555
CRR073305Juvenile bud 37.224
CRR073306Third green 10.738
CRR073307Third green 20.056
CRR073308Third green 30.483
CRR073309Second white 10.352
CRR073310Second white 20.157
CRR073311Second white 30.036
CRR073312Silver flowering 10.162
CRR073313Silver flowering 20.445
CRR073314Silver flowering 30.095
CRR073315Gold flowering 15.354
CRR073316Gold flowering 27.635
CRR073317Gold flowering 33.450
CRR073318Tawny withering 17.104
CRR073319Tawny withering 26.777
CRR073320Tawny withering 35.695