Gene detail

Detail information of GWHGAAZE009631

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009631403.1	PREDICTED: tyrosine decarboxylase 1-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q7XHL3\|TYDC1_ORYSJ	Tyrosine decarboxylase 1
trEMBL	tr\|B9GRB9\|B9GRB9_POPTR	Tyrosine decarboxylase family protein {ECO:0000313\|EMBL:EEE81112.2}
TAIR10	AT2G20340.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	114124315	114140345	+
GWHAAZE00000002	mRNA	114124315	114140345	+
GWHAAZE00000002	exon	114124315	114124493	+
GWHAAZE00000002	exon	114124669	114124789	+
GWHAAZE00000002	exon	114125344	114125416	+
GWHAAZE00000002	exon	114125605	114125835	+
GWHAAZE00000002	exon	114128454	114128617	+
GWHAAZE00000002	exon	114129906	114129965	+
GWHAAZE00000002	exon	114130198	114130362	+
GWHAAZE00000002	exon	114130959	114131015	+
GWHAAZE00000002	exon	114139249	114139313	+
GWHAAZE00000002	exon	114139724	114139847	+
GWHAAZE00000002	exon	114139971	114140111	+
GWHAAZE00000002	exon	114140211	114140345	+
GWHAAZE00000002	five_prime_UTR	114124315	114124491	+
GWHAAZE00000002	CDS	114124492	114124493	+
GWHAAZE00000002	CDS	114124669	114124789	+
GWHAAZE00000002	CDS	114125344	114125416	+
GWHAAZE00000002	CDS	114125605	114125835	+
GWHAAZE00000002	CDS	114128454	114128617	+
GWHAAZE00000002	CDS	114129906	114129965	+
GWHAAZE00000002	CDS	114130198	114130362	+
GWHAAZE00000002	CDS	114130959	114131015	+
GWHAAZE00000002	CDS	114139249	114139313	+
GWHAAZE00000002	CDS	114139724	114139847	+
GWHAAZE00000002	CDS	114139971	114140111	+
GWHAAZE00000002	CDS	114140211	114140345	+

Transcript Sequence
>GWHTAAZE009643 CCGTCCTTCATTTTTGTCCCCATTGTTTTGGGGCAAATCATCTTCTCTCTCCTCCATTATTAGGACTGGAGGAATTATATATGTTTTGTCAAAACACTTGGTTTCTCTCTGCTTTTGATCACTTCACTTTACACCACTTCCAACTATTTTGTAACTTACAAATAATTATCACCAAAAATGGAGGGTGGGTTGAAGCCAATGGACGCTGAACAACTGAGAGAGAACGCTCACAAGATGGTTGATTTCATTGCCGATTACTACAAGAACATTGAGACTTATCCTGTTCTCAGCCAAGTTGAGCCTGGATATCTGCGTAAACTTCTGCCAGATTCTGCACCGACTCAACCTGAAACACTGCAAGATGTTCTTGATGATGTGCAGGCAAATATATTACCAGGGGTAACCCACTGGCAAAGCCCAGATTTTTTTGCGTATTTTTCATCTAATAGCAGTGTTGCGGGATTTTTAGGAGAAATGCTCAGTGCCGGTATTAACATGGTGGGTTTTAGTTGGATAACTTCTCCTGCAGCCACAGAACTTGAAATGATTGTCCTGGATTGGCTTGCAAACCTCCTTAAGCTTCCCAATGACTTTCTTTCAACAGGGAAAGGTGGTGGAGTAATACAGGGCACAGCTAGCGAGGCTGTTCTGGTGGTGCTATTGGCTGCTCGTGATAAAGTTTTGAGAAGAGTTGGAAAAGATGCCCTTGGAAAGCTTGTGGTTTATGCTTCTGATCAAACTCATTCTGCTTTACAGAAAGCTTGCCAGGTTGGTACTACTTCTTCAACAGCTGTAGATCCTCTGCTTGCACTCGGAAAGATTTCTAAGAGTAATGGAATATGGCTTCACGTAGATGCAGCATATGCTGGAAGCGCTTGTATATGCCCAGAATTCCGCCACTACATTGATGGTGTTGAAGAAGCAAATTCATTTAATATGAATGCACATAAGTGGTTTTTAACAAACTTTGATTGTTCGGCGCTCTGGGTTAAGGACCGAACTGCTCTGATCCAGTCACTATCAACAAATCCTGAGTTCCTTAAAAATAAAGCTTCTGAAGGAAACATGGTTGTCGACTACAAAGATTGGCAAATTCCACTTGGGCGCAGGTTCAGATCATTGAAATTATGGATGGTATTACGACTTTACGGTGTGGAAAATCTGCAATCTTACATAAGAAACCACATTGAATTGGCTAAACATTTTGAAGAACTTATTGCTCAGGATGCGAGATTTGAGGTTGTTGCCACTCGAAAGTTTTCGTTAGTTTGCTTCCGTCTTGTATCTCCTCCTCATAATGATGAAGATTGTGGCAATAAACTGAACCACGACCTATTGGATGCTGTTAACTCCACCGGCAAGATTTACATTTCTCACACAGTTCTGTCGGGTAAGTATGTACTACGCTTTGCAGTAGGAGCTCCATTGACAGAAGAGAGGCACGTTACTGCAGCTTGGAAGGTTCTGCAAAGCAAGGCCTCTGCCCTCTTAGAAAAATGTCAGCCTTTAGAGTAA

Network for GWHGAAZE009631

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00282.20	Pyridoxal_deC	197	368	3.40E-63

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01593	DDC, TDC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Tyrosine metabolism	map00350
		Phenylalanine metabolism	map00360
		Tryptophan metabolism	map00380
		Indole alkaloid biosynthesis	map00901
		Isoquinoline alkaloid biosynthesis	map00950
		Betalain biosynthesis	map00965
		Dopaminergic synapse	map04728
		Serotonergic synapse	map04726
		Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0019752	biological_process	carboxylic acid metabolic process
GO:0006520	biological_process	cellular amino acid metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0016831	molecular_function	carboxy-lyase activity
GO:0030170	molecular_function	pyridoxal phosphate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.438
	SRR3591706	second leaf	23.535
	SRR3591707	mature leaf	27.000
	SRR3591708	Shoot apex	21.070
	SRR3591709	Stem	12.158
	SRR3591710	White floral bud	5.728
	SRR3591711	White flower	5.638
	SRR3591712	Green floral bud	11.411
	SRR3591713	Yellow flower	2.785
SRP173429	SRR8316895	Juvenile bud stage	15.305
	SRR8316896	Juvenile bud stage	18.968
	SRR8316897	Juvenile bud stage	8.372
	SRR8316894	Third green stage	8.095
	SRR8316900	Third green stage	14.412
	SRR8316901	Third green stage	12.471
	SRR8316898	Complete white stage	2.385
	SRR8316899	Complete white stage	25.647
	SRR8316903	Complete white stage	3.508
	SRR8316902	Silver flowering stage	0.511
	SRR8316904	Silver flowering stage	0.614
	SRR8316905	Silver flowering stage	0.262
	SRR8316906	Gold flowering stage	1.649
	SRR8316907	Gold flowering stage	1.170
	SRR8316908	Gold flowering stage	1.118
SRP132670	SRR6706286	Control	16.362
	SRR6706287	Light intensity 50%	16.391
	SRR6706288	Light intensity 20%	18.943
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.806
	CNS0095593	Slightly white alabastrum(diploid) 2	12.136
	CNS0095594	Slightly white alabastrum(diploid) 3	9.332
	CNS0095595	Whole white alabastrum(diploid) 2	12.386
	CNS0095596	Whole white alabastrum(diploid) 3	7.432
	CNS0095597	Whole white alabastrum(diploid) 4	9.950
	CNS0095598	Silvery flower (diploied) 1	10.099
	CNS0095599	Silvery flower (diploied) 2	10.813
	CNS0095600	Silvery flower (diploied) 3	5.560
	CNS0095601	Golden flower (diploid) 1	8.900
	CNS0095602	Golden flower (diploid) 2	8.314
	CNS0095603	Golden flower (diploid) 3	8.338
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.350
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.491
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.799
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.331
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.698
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.427
	CNS0095610	Silvery flower (tetraploid) 1	2.182
	CNS0095611	Silvery flower (tetraploid) 2	3.901
	CNS0095612	Silvery flower (tetraploid) 3	1.830
	CNS0095613	Golden flower (tetraploid) 1	0.467
	CNS0095614	Golden flower (tetraploid) 2	1.936
	CNS0095615	Golden flower (tetraploid) 3	0.282
CRA001975	CRR073297	Stem 1	19.462
	CRR073298	Stem 2	18.668
	CRR073299	Stem 3	17.740
	CRR073300	Leaf 1	14.943
	CRR073301	Leaf 2	13.864
	CRR073302	Leaf 3	12.344
	CRR073303	Juvenile bud 1	10.937
	CRR073304	Juvenile bud 2	5.381
	CRR073305	Juvenile bud 3	9.794
	CRR073306	Third green 1	0.278
	CRR073307	Third green 2	0.239
	CRR073308	Third green 3	0.690
	CRR073309	Second white 1	0.631
	CRR073310	Second white 2	0.233
	CRR073311	Second white 3	0.518
	CRR073312	Silver flowering 1	0.084
	CRR073313	Silver flowering 2	0.532
	CRR073314	Silver flowering 3	0.155
	CRR073315	Gold flowering 1	18.217
	CRR073316	Gold flowering 2	28.810
	CRR073317	Gold flowering 3	18.178
	CRR073318	Tawny withering 1	12.110
	CRR073319	Tawny withering 2	12.435
	CRR073320	Tawny withering 3	9.983