Gene detail

Detail information of GWHGAAZE009579

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002268712.1	PREDICTED: GPI transamidase component PIG-S [Vitis vinifera]
trEMBL	tr\|M1BH37\|M1BH37_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400045113}
TAIR10	AT3G07180.1	GPI transamidase component PIG-S-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	112732361	112737727	+
GWHAAZE00000002	mRNA	112732361	112737727	+
GWHAAZE00000002	exon	112732361	112732520	+
GWHAAZE00000002	exon	112732698	112733406	+
GWHAAZE00000002	exon	112733781	112733865	+
GWHAAZE00000002	exon	112734312	112734401	+
GWHAAZE00000002	exon	112734821	112734894	+
GWHAAZE00000002	exon	112735202	112735286	+
GWHAAZE00000002	exon	112735408	112735497	+
GWHAAZE00000002	exon	112736020	112736150	+
GWHAAZE00000002	exon	112736231	112736312	+
GWHAAZE00000002	exon	112736397	112736444	+
GWHAAZE00000002	exon	112736836	112736908	+
GWHAAZE00000002	exon	112736993	112737154	+
GWHAAZE00000002	exon	112737333	112737727	+
GWHAAZE00000002	CDS	112732361	112732520	+
GWHAAZE00000002	CDS	112732698	112733406	+
GWHAAZE00000002	CDS	112733781	112733865	+
GWHAAZE00000002	CDS	112734312	112734401	+
GWHAAZE00000002	CDS	112734821	112734894	+
GWHAAZE00000002	CDS	112735202	112735286	+
GWHAAZE00000002	CDS	112735408	112735497	+
GWHAAZE00000002	CDS	112736020	112736150	+
GWHAAZE00000002	CDS	112736231	112736312	+
GWHAAZE00000002	CDS	112736397	112736444	+
GWHAAZE00000002	CDS	112736836	112736908	+
GWHAAZE00000002	CDS	112736993	112737154	+
GWHAAZE00000002	CDS	112737333	112737727	+

Transcript Sequence
>GWHTAAZE009591 ATGGCGGAAATCTCTGAAACTTTGGAAGACGAATCAAATTCCAACAAGACGACGGACAAATCAGAAGCATCGGATTTCGACTTCAACACTATGCGAAAGACAAAACCTGGATTGAAGCGCCTCTTCCTTATCCTTACTGTTTTCGTCTCTTTCCTCTTAGGTATGCCGTTCTTGCTCAAATCCATTGAGATCTATCGCTCGCCTCTCCCATTTCGAGACATTGATGCATTATCAAGTTCAATAGATTCGAATCCGTTGCTATTCCCCTGCCAATTCCAGGCAGTGTTTCTAGATTTTGATCACACTACTTCTGGTGAGTTAGATGTAGATAAACTAGGGTTTTCCATTCTAGGTCATATGCAAAAGTTCACTGGCAATGATCCAGTATGTGGCACTTGTGGCAACAATTACAGTGTTTCAGTAACACTAGACTCTGGTAACCACTGTTTGCACAATCAAGCTGCCAGTATTGCTAGTTCGTGGCCGTGTGGGGCAATGAAGGAGTTGAAATTTGAAGGGAGCTTGAAAAATGATGAGGCTTTTGATGAATATTTGAATTCTGTATTGGTAGGAGGTGAAGGTTATGTAGAAAATGGTGAGAAGGTTTATACAGTTGTGGTGGTTAATAGGAAGGATGATGAGGGAGTTAGGGTTGTGGTGGGGAAGCATAGACATGCTTGGATTGTAGGTAGGGATTCAGTGGTGGAAGCGGTGGAGAAGGTAGCTGAGATTTTTGTTAAGATATTTGTGAATGGTGGGAAAGAAGAAGGGTTGATTCATGGGGAGTTTATGCCTGTGGGTGCTGATGGAAGGGTTGTGCTTTCTTTCAATTTGTTGAATGCCGACCCACACGATTGGATTTATGATTGGAATTTTCAGGAGATAGATGAGATTCTTTTGGATCCGATCATCGAGGCTTTAGGGCCTTTAGCAAATATAAGCATTGAAAGTCAGGTTTTGTACCATACTCCAAAGTCTTCATTTTCTTATTGGGATGAGAAGCAGGCGGGCAACATTTTTAGCACCAAAGATCTACCTTTCTTTGTCAATTCAAATGAGTGGCACTTGGATACTTCCATTGCAGCTGGTGGTCGCTCGAAAATCTTGCAATTTGTGGTATATGTGCCATCTGCAAAAGAATGTCCTCTTCTGTTACAGCTTCCAAGTGGAGAGGTTTCAGGGACAAATGGGTTTATATCTCCAATGTGGGGAGGTGTAGTTGTTTGGAATCCGCCGGGATGTTTAAGAGATTCAGAAAGTATGCATCCCCCCAGATATAAAATATCCCCACAGGATCTGATGAAGATTTTTGAAGTTTTCACAGGGCAAATCCGGCAACTATTTGGTCTGAAATCTGATAGGCTCTACATGGGTACGTCAGTCACGACCACCGTTTTAGCCAGTGAAAGAGGCTTTACAGAATGGGAATTGGATCTCTTGTCCAGACAACACACATGTTTTAATCTTCTTCAATGCGGTACAACACTTGGATCACTTTCCCGATTGGTCCAGTCGCTTCCAAGGATGATTATCATGGATGAGATTGGAAAACAGGTAAAATTTTCCCTTGAAGCTGCAAAACTTGCTTGGAGTAAGGCCTCTCGAGGAATTTATAATGCTTCAGCTGTGGCCTCAAGGCAAGCTAGATCATTGGCAGAGGATGCCTTTTTCCACCCGTCTATAATGTCCGTGAGCTACTACTCGTTCGAGCATTGCTTTGCTGTCTACTCGGTTAGTTCCATTGCGATGAGAAACACAAATCTTGATTATGAGAAAATAACTTCATTCATACTAAATGGGATTGGGGTTAGCTTTAAGGATGAATGGTACATGTACTACAAGTCATCTGTAATTTCTGATCTTGTATATCCATCTGCTAAACACTTTGTTGCATTTGTACTTTATTTGAAAAGGCATACCATATTGAAGGAATTCGAGAAACTGATTGTGATATCTATCCTCTTCTATTTTGACAGCCGTTCTTCCTGCCAGTCTCGTTGCATGTCCTTCTGGCAGTTGTCCGAGAATGGAAAAGGTACAAGCACGAAAGCGCGAAGTACAGGGAATGGAAAGCCAAAGAAATATAAACCTGTTGACAAATTCTTCCACTATACCCAAATGGATATGAAGCAAAGCCCGTTTTGTTGGAGATATGAAATTGTAGTCATTGTAGGATGTGATTGA

Network for GWHGAAZE009579

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10510.10	PIG-S	47	576	4.00E-114

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05291	PIGS	Metabolic pathways	map01100
K05291	PIGS	Glycosylphosphatidylinositol	map00563

Gene Ontology

GO term	Ontology	Name
GO:0016255	biological_process	attachment of GPI anchor to protein
GO:0042765	cellular_component	GPI-anchor transamidase complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.096
	SRR3591706	second leaf	14.854
	SRR3591707	mature leaf	12.857
	SRR3591708	Shoot apex	22.912
	SRR3591709	Stem	21.610
	SRR3591710	White floral bud	29.687
	SRR3591711	White flower	26.246
	SRR3591712	Green floral bud	32.822
	SRR3591713	Yellow flower	21.273
SRP173429	SRR8316895	Juvenile bud stage	17.967
	SRR8316896	Juvenile bud stage	24.470
	SRR8316897	Juvenile bud stage	11.931
	SRR8316894	Third green stage	10.056
	SRR8316900	Third green stage	29.264
	SRR8316901	Third green stage	25.311
	SRR8316898	Complete white stage	9.383
	SRR8316899	Complete white stage	30.706
	SRR8316903	Complete white stage	16.870
	SRR8316902	Silver flowering stage	9.667
	SRR8316904	Silver flowering stage	13.902
	SRR8316905	Silver flowering stage	5.438
	SRR8316906	Gold flowering stage	19.483
	SRR8316907	Gold flowering stage	18.083
	SRR8316908	Gold flowering stage	18.307
SRP132670	SRR6706286	Control	20.676
	SRR6706287	Light intensity 50%	23.143
	SRR6706288	Light intensity 20%	23.763
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.193
	CNS0095593	Slightly white alabastrum(diploid) 2	21.814
	CNS0095594	Slightly white alabastrum(diploid) 3	20.658
	CNS0095595	Whole white alabastrum(diploid) 2	20.861
	CNS0095596	Whole white alabastrum(diploid) 3	21.801
	CNS0095597	Whole white alabastrum(diploid) 4	19.909
	CNS0095598	Silvery flower (diploied) 1	17.279
	CNS0095599	Silvery flower (diploied) 2	17.433
	CNS0095600	Silvery flower (diploied) 3	22.283
	CNS0095601	Golden flower (diploid) 1	14.036
	CNS0095602	Golden flower (diploid) 2	21.747
	CNS0095603	Golden flower (diploid) 3	18.535
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.317
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.444
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.132
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.852
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.378
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.613
	CNS0095610	Silvery flower (tetraploid) 1	22.347
	CNS0095611	Silvery flower (tetraploid) 2	19.570
	CNS0095612	Silvery flower (tetraploid) 3	18.930
	CNS0095613	Golden flower (tetraploid) 1	12.707
	CNS0095614	Golden flower (tetraploid) 2	19.984
	CNS0095615	Golden flower (tetraploid) 3	15.690
CRA001975	CRR073297	Stem 1	23.778
	CRR073298	Stem 2	22.818
	CRR073299	Stem 3	22.591
	CRR073300	Leaf 1	23.437
	CRR073301	Leaf 2	21.646
	CRR073302	Leaf 3	19.357
	CRR073303	Juvenile bud 1	19.446
	CRR073304	Juvenile bud 2	15.834
	CRR073305	Juvenile bud 3	22.572
	CRR073306	Third green 1	5.804
	CRR073307	Third green 2	6.577
	CRR073308	Third green 3	7.331
	CRR073309	Second white 1	8.576
	CRR073310	Second white 2	8.172
	CRR073311	Second white 3	7.914
	CRR073312	Silver flowering 1	8.709
	CRR073313	Silver flowering 2	8.785
	CRR073314	Silver flowering 3	9.705
	CRR073315	Gold flowering 1	8.348
	CRR073316	Gold flowering 2	10.371
	CRR073317	Gold flowering 3	6.595
	CRR073318	Tawny withering 1	14.774
	CRR073319	Tawny withering 2	18.330
	CRR073320	Tawny withering 3	16.191