Detail information of GWHGAAZE009576


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrACZ64257.11.13948E-88RPM1 interacting protein 4 transcript 2 [Lactuca viminea]
Swissprottr|Q8GYN5|RIN4_ARATH4E-44RPM1-interacting protein 4
trEMBLtr|D2J0X9|D2J0X9_9ASTR4E-89RPM1 interacting protein 4 transcript 2 {ECO:0000313|EMBL:ACZ64257.1}
TAIR10AT3G25070.15E-28RPM1 interacting protein 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene112699451112701149-
GWHAAZE00000002mRNA112699451112701149-
GWHAAZE00000002exon112699451112699477-
GWHAAZE00000002exon112699800112699988-
GWHAAZE00000002exon112700580112701149-
GWHAAZE00000002CDS112700580112701149-
GWHAAZE00000002CDS112699800112699988-
GWHAAZE00000002CDS112699451112699477-
Transcript Sequence

Network for GWHGAAZE009576

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05627.12AvrRpt-cleavage1912261.00E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13456RIN4 Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.556
SRR3591706second leaf20.267
SRR3591707mature leaf30.723
SRR3591708Shoot apex10.280
SRR3591709Stem38.736
SRR3591710White floral bud16.290
SRR3591711White flower25.143
SRR3591712Green floral bud14.441
SRR3591713Yellow flower27.641
SRP173429 SRR8316895Juvenile bud stage 14.170
SRR8316896Juvenile bud stage 20.883
SRR8316897Juvenile bud stage 8.668
SRR8316894Third green stage 8.496
SRR8316900Third green stage 19.171
SRR8316901Third green stage 22.521
SRR8316898Complete white stage 13.580
SRR8316899Complete white stage 40.243
SRR8316903Complete white stage 18.872
SRR8316902Silver flowering stage20.505
SRR8316904Silver flowering stage24.546
SRR8316905Silver flowering stage15.286
SRR8316906Gold flowering stage 70.756
SRR8316907Gold flowering stage 66.102
SRR8316908Gold flowering stage 75.504
SRP132670SRR6706286Control38.628
SRR6706287Light intensity 50%39.880
SRR6706288Light intensity 20%37.700
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.489
CNS0095593Slightly white alabastrum(diploid) 221.105
CNS0095594Slightly white alabastrum(diploid) 324.081
CNS0095595Whole white alabastrum(diploid) 212.464
CNS0095596Whole white alabastrum(diploid) 37.893
CNS0095597Whole white alabastrum(diploid) 413.880
CNS0095598Silvery flower (diploied) 131.823
CNS0095599Silvery flower (diploied) 218.211
CNS0095600Silvery flower (diploied) 322.028
CNS0095601Golden flower (diploid) 120.254
CNS0095602Golden flower (diploid) 231.855
CNS0095603Golden flower (diploid) 331.218
CNS0095604Slightly white alabastrum(tetraploid) 19.410
CNS0095605Slightly white alabastrum(tetraploid) 210.624
CNS0095606Slightly white alabastrum(tetraploid) 321.296
CNS0095607Whole white alabastrum(tetraploid) 16.937
CNS0095608Whole white alabastrum(tetraploid) 24.136
CNS0095609Whole white alabastrum(tetraploid) 310.468
CNS0095610Silvery flower (tetraploid) 120.946
CNS0095611Silvery flower (tetraploid) 215.705
CNS0095612Silvery flower (tetraploid) 330.784
CNS0095613Golden flower (tetraploid) 130.603
CNS0095614Golden flower (tetraploid) 231.080
CNS0095615Golden flower (tetraploid) 356.920
CRA001975CRR073297Stem 119.208
CRR073298Stem 217.029
CRR073299Stem 317.100
CRR073300Leaf 121.133
CRR073301Leaf 229.033
CRR073302Leaf 324.697
CRR073303Juvenile bud 124.335
CRR073304Juvenile bud 223.835
CRR073305Juvenile bud 321.738
CRR073306Third green 145.134
CRR073307Third green 227.559
CRR073308Third green 330.637
CRR073309Second white 140.648
CRR073310Second white 254.566
CRR073311Second white 345.222
CRR073312Silver flowering 155.679
CRR073313Silver flowering 268.725
CRR073314Silver flowering 365.477
CRR073315Gold flowering 151.584
CRR073316Gold flowering 255.057
CRR073317Gold flowering 365.189
CRR073318Tawny withering 166.071
CRR073319Tawny withering 2121.032
CRR073320Tawny withering 343.162