Gene detail

Detail information of GWHGAAZE009515

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011089616.1	0	PREDICTED: poly(A)-specific ribonuclease PARN-like isoform X4 [Sesamum indicum]
Swissprot	tr\|Q8W4C3\|PARNL_ARATH	2E-142	Poly(A)-specific ribonuclease PARN-like
trEMBL	tr\|A0A067EXE0\|A0A067EXE0_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO58560.1}
TAIR10	AT3G25430.1	1E-120	Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	111519590	111524248	-
GWHAAZE00000002	mRNA	111519590	111524248	-
GWHAAZE00000002	exon	111519590	111520245	-
GWHAAZE00000002	exon	111520606	111520658	-
GWHAAZE00000002	exon	111520753	111520978	-
GWHAAZE00000002	exon	111521082	111521196	-
GWHAAZE00000002	exon	111521493	111521609	-
GWHAAZE00000002	exon	111522415	111522527	-
GWHAAZE00000002	exon	111522998	111523128	-
GWHAAZE00000002	exon	111523908	111524248	-
GWHAAZE00000002	CDS	111523908	111524248	-
GWHAAZE00000002	CDS	111522998	111523128	-
GWHAAZE00000002	CDS	111522415	111522527	-
GWHAAZE00000002	CDS	111521493	111521609	-
GWHAAZE00000002	CDS	111521082	111521196	-
GWHAAZE00000002	CDS	111520753	111520978	-
GWHAAZE00000002	CDS	111520606	111520658	-
GWHAAZE00000002	CDS	111519590	111520245	-

Transcript Sequence
>GWHTAAZE009527 ATGATGGTTCGGCCTCCATTTATTATTCTGCATAAGCGCTTTCTCTGCACCAAAATTTTCAACCACCACCACCACCGCCGCCAGTGGAGCGTAAAACAAGTTACAAAATCAAATTTCTCAGAATCACTCGACGAAATTAAGAATAGCATCTTCGAATCAGATTTCGTAGCTTTGTCATTGCAGAAGACTGGTTCCCACTCAGCTCCTTGGCATCGGGTACTTCCCGTCGATACGGCTGAAACGGCCTACTTGAAGGCCAAGTACGCCGCCGAAAGGTTTCAGGTTCTTCAATTCTCCCTTTGCCCTTTCTCTATTAGGGCTTCCAAGGTTATTGCCCACCCTTACAACTTTCATCTGTTCCCTCGGGATGAGTTGAAAATAAACTTGCCTTCATACAGTTTTTCATGTCAATCTTCATATTTGACCTCTATGGCCCGAGAAGGTTTCGACTTTAATGTCTGCATATATGAAGAGGCTTTAATTAAATCCCTGAGAAAACTTATATTAGGAAGTGAAGAGTATGGATCAAGGCCATGTTTGAGTATAGATGTTTGTAGTGAACGCCAAGTGCAGCTCGTTCTTGAGACTTTGACTGGGTTCTCTGATGATGTGGTACCTTTACTAATCCCGGTGAAGGGAGGTGGAACTCGAGCTGTTCGGGTAGTTTTAACAAGTTCAAAAGAAGACAAGGATCTTTTTCAGAAGGAGCTTCAAAACATGGAAGAGGAACAAAACAAGCGCTTTCGTGGATTTCGAGAGGTGATCGATTTGATTTCCACTTCTCAGAAACCTGTTGTTGCCCACAACTCACTTAATGATTTTACGTTTATTCATTCAAAATTCCTATCTCCACTCCCTCCAACGGTGGATGAGTTCAGAATCTCCTTGGGTGCGGTCTTTCCCCATGTACTCGATATCAGCCATCTTATGAAGGACATTAGCCCTCTGAACAAGGGAGCCAACTTACCTGGAGCAATTTCCTATATAAAAAAACGATTCTTTGCACCTATGGATATGGAGATTCAGATTCCTCACCAAGGCAAGGGTGCATTTCGTTGCTACCATGGAATCGTGATAGACAATAGTTCAATTCCAGATGAGACAAATGAATGCAAGACTCATCATGGGCACAATGTTCTGAAAATAACCGAGTTGTTTGCTAAAATCTGCTCTATACTGAAAATCACAATAGAAACTCCACAAGCAGATGATACCCATTTATCTTCACCCCTCAAAACCTATTCGAATATCTTCGGTCCATGTTCAAGTAATTCCGAAGATCCAATCAATGAGGATGTCAAAGTTTGGGCCAAAAACACAACGAAAATTCGGACCGAGGATTTGGTTTTCTTGTGGGGATTCAAAGGTGGAATGTCTGCGGGGATGCTGAAGAGCCATCTACACGAATCCCATCAAGTTTTCGCCAAGGAATTTGATGTTCAGTTGGTCGATAAGAGCTGTGCCATTGTTGTTTTCCGAGACCAGGGTTTGTCCAGGGATTTTCTCGCGGAAATGGATTCCGGAGGGAAATGTAGTGAATCTGTGAGGGAGATGATATCAGATGGCTTGAGAGGTTCAAGTTATGAGAGTTACAAGAGAGTGTGTAGGTTGGGTTTATGGGAAGCAGTTTTAGCTGATGCATTAGAAAAAGCCTTGGCAGAGTCTGATGATTGTAGTTTAGAAAGTCAGTCCAAGGAATCAGTAGAGGTTGACTGGGACAGTGACTTGATGATAAACCTAGATGACCTGTAA

Network for GWHGAAZE009515

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04857.21	CAF1	34	338	4.40E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01148	PARN, PNLDC1	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.258
	SRR3591706	second leaf	0.865
	SRR3591707	mature leaf	1.228
	SRR3591708	Shoot apex	5.746
	SRR3591709	Stem	1.970
	SRR3591710	White floral bud	0.791
	SRR3591711	White flower	1.979
	SRR3591712	Green floral bud	2.469
	SRR3591713	Yellow flower	1.116
SRP173429	SRR8316895	Juvenile bud stage	5.254
	SRR8316896	Juvenile bud stage	7.071
	SRR8316897	Juvenile bud stage	7.063
	SRR8316894	Third green stage	2.457
	SRR8316900	Third green stage	6.308
	SRR8316901	Third green stage	5.718
	SRR8316898	Complete white stage	0.926
	SRR8316899	Complete white stage	5.914
	SRR8316903	Complete white stage	2.019
	SRR8316902	Silver flowering stage	1.393
	SRR8316904	Silver flowering stage	1.878
	SRR8316905	Silver flowering stage	0.617
	SRR8316906	Gold flowering stage	2.837
	SRR8316907	Gold flowering stage	1.957
	SRR8316908	Gold flowering stage	5.953
SRP132670	SRR6706286	Control	4.312
	SRR6706287	Light intensity 50%	3.795
	SRR6706288	Light intensity 20%	4.779
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.433
	CNS0095593	Slightly white alabastrum(diploid) 2	5.132
	CNS0095594	Slightly white alabastrum(diploid) 3	4.759
	CNS0095595	Whole white alabastrum(diploid) 2	4.145
	CNS0095596	Whole white alabastrum(diploid) 3	3.694
	CNS0095597	Whole white alabastrum(diploid) 4	3.489
	CNS0095598	Silvery flower (diploied) 1	4.931
	CNS0095599	Silvery flower (diploied) 2	4.035
	CNS0095600	Silvery flower (diploied) 3	3.384
	CNS0095601	Golden flower (diploid) 1	2.760
	CNS0095602	Golden flower (diploid) 2	2.755
	CNS0095603	Golden flower (diploid) 3	3.385
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.628
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.603
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.021
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.930
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.416
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.032
	CNS0095610	Silvery flower (tetraploid) 1	6.790
	CNS0095611	Silvery flower (tetraploid) 2	6.481
	CNS0095612	Silvery flower (tetraploid) 3	3.847
	CNS0095613	Golden flower (tetraploid) 1	5.055
	CNS0095614	Golden flower (tetraploid) 2	6.642
	CNS0095615	Golden flower (tetraploid) 3	6.197
CRA001975	CRR073297	Stem 1	3.549
	CRR073298	Stem 2	3.891
	CRR073299	Stem 3	3.055
	CRR073300	Leaf 1	4.626
	CRR073301	Leaf 2	4.009
	CRR073302	Leaf 3	2.894
	CRR073303	Juvenile bud 1	4.254
	CRR073304	Juvenile bud 2	1.778
	CRR073305	Juvenile bud 3	2.991
	CRR073306	Third green 1	0.114
	CRR073307	Third green 2	0.391
	CRR073308	Third green 3	0.210
	CRR073309	Second white 1	1.149
	CRR073310	Second white 2	1.087
	CRR073311	Second white 3	0.971
	CRR073312	Silver flowering 1	0.543
	CRR073313	Silver flowering 2	0.948
	CRR073314	Silver flowering 3	0.400
	CRR073315	Gold flowering 1	3.967
	CRR073316	Gold flowering 2	5.420
	CRR073317	Gold flowering 3	2.241
	CRR073318	Tawny withering 1	3.098
	CRR073319	Tawny withering 2	2.111
	CRR073320	Tawny withering 3	2.659