Gene detail

Detail information of GWHGAAZE009494

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011089591.1	4.48063E-94	PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X2 [Sesamum indicum]
Swissprot	tr\|Q8VZ52\|ATG10_ARATH	6E-73	Ubiquitin-like-conjugating enzyme ATG10
trEMBL	tr\|E0CW01\|E0CW01_VITVI	5E-90	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23334.3}
TAIR10	AT3G07525.1	2E-53	autophagocytosis-associated family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	111183921	111187337	+
GWHAAZE00000002	mRNA	111183921	111187337	+
GWHAAZE00000002	exon	111183921	111184289	+
GWHAAZE00000002	exon	111185101	111185151	+
GWHAAZE00000002	exon	111185342	111185425	+
GWHAAZE00000002	exon	111185764	111185863	+
GWHAAZE00000002	exon	111186187	111186284	+
GWHAAZE00000002	exon	111187110	111187337	+
GWHAAZE00000002	five_prime_UTR	111183921	111184109	+
GWHAAZE00000002	CDS	111184110	111184289	+
GWHAAZE00000002	CDS	111185101	111185151	+
GWHAAZE00000002	CDS	111185342	111185425	+
GWHAAZE00000002	CDS	111185764	111185863	+
GWHAAZE00000002	CDS	111186187	111186284	+
GWHAAZE00000002	CDS	111187110	111187337	+

Transcript Sequence
>GWHTAAZE009506 GAAAAAAAAAAATTAATAAAAATCTATCGATCGATCGTTCTCGGCCCTCTAGTAGACGAATCTCTAGTGACAGGTTAGGTTGCCAAATACCCTTCTTTTTCCAATTGTTTGTTTAATTTTATTTACATAGACGTTGATTTTGTTTTCAATCCTTAATTTATTGGTGTTCGTTTTATGAATTAGGGTGTGATGGTTTCAGTTTCAGACAAGAAGGCAACAAAAAGCATTGATACTGATGGAACCCTTTCATCCACTGAATTCTGTAGTGCTGCTTTTGCTTTTGCTGATAAATGGAAAATCTTCGACTCCTCTCCCCCTCACTGGTCCTGGGTTCCTTCTCCGAAGAAATCTTTGATTTCTGCCCATCAAGTGGAGGGATATTTGTTGCTACAAAATGTTGTTCTTCCTACATTTAGTGAGGAAGATCACAATGAAGGCAGGATCACGGGACAAACAGAACTCAGTTGCTCCGATAGTGATGAGCCTATTGATGATGCCATTTTGGTCCAGAGCTGCAGTGATGATGTACACCACTACGACTTCCATGTAGTGTACAGCGGTTCATATAGGGTTCCAGTGCTATACTTCCGCGCATACTGCAGTGATGGACAGCCTTTAACGTTAGATGACATTGAGAAGGACCTCCCTGCCAACTCTGCGAAGGTGCTGAGTGAGTCCAAATGGACTTTCGTAACACAAGAGGAGCATCCGTACTTGAATAGGCCCTGGTATACATTGCACCCGTGTGGGACCAGTGAGTGGATGAAGCTGCTACTTAATACTACTAAGAAAAGGGATGATGATGATTCCTCTACATTGGTGGCCGAAGGAGGGGTGCTAATTGAAAAATACCTGGCAGCGTGGCTCTCAGTGGTTGGCCAGGTGTTTGGTCTCAAAATCCCCTTTGAAATGGTGCGCACTTGTAATTGA

Network for GWHGAAZE009494

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03987.16	Autophagy_act_C	23	238	1.70E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17888	ATG10L, ATG10	Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.864
	SRR3591706	second leaf	10.126
	SRR3591707	mature leaf	12.600
	SRR3591708	Shoot apex	15.866
	SRR3591709	Stem	22.112
	SRR3591710	White floral bud	14.054
	SRR3591711	White flower	11.498
	SRR3591712	Green floral bud	13.226
	SRR3591713	Yellow flower	7.238
SRP173429	SRR8316895	Juvenile bud stage	11.498
	SRR8316896	Juvenile bud stage	16.010
	SRR8316897	Juvenile bud stage	8.631
	SRR8316894	Third green stage	6.445
	SRR8316900	Third green stage	18.604
	SRR8316901	Third green stage	13.752
	SRR8316898	Complete white stage	3.808
	SRR8316899	Complete white stage	18.509
	SRR8316903	Complete white stage	5.933
	SRR8316902	Silver flowering stage	3.180
	SRR8316904	Silver flowering stage	4.616
	SRR8316905	Silver flowering stage	1.754
	SRR8316906	Gold flowering stage	6.425
	SRR8316907	Gold flowering stage	8.851
	SRR8316908	Gold flowering stage	6.262
SRP132670	SRR6706286	Control	10.796
	SRR6706287	Light intensity 50%	10.108
	SRR6706288	Light intensity 20%	8.347
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.226
	CNS0095593	Slightly white alabastrum(diploid) 2	14.786
	CNS0095594	Slightly white alabastrum(diploid) 3	17.568
	CNS0095595	Whole white alabastrum(diploid) 2	16.231
	CNS0095596	Whole white alabastrum(diploid) 3	13.388
	CNS0095597	Whole white alabastrum(diploid) 4	14.923
	CNS0095598	Silvery flower (diploied) 1	13.176
	CNS0095599	Silvery flower (diploied) 2	9.268
	CNS0095600	Silvery flower (diploied) 3	7.253
	CNS0095601	Golden flower (diploid) 1	13.494
	CNS0095602	Golden flower (diploid) 2	10.401
	CNS0095603	Golden flower (diploid) 3	12.549
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.732
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.252
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.413
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.938
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.221
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.320
	CNS0095610	Silvery flower (tetraploid) 1	8.419
	CNS0095611	Silvery flower (tetraploid) 2	9.313
	CNS0095612	Silvery flower (tetraploid) 3	9.732
	CNS0095613	Golden flower (tetraploid) 1	10.000
	CNS0095614	Golden flower (tetraploid) 2	11.600
	CNS0095615	Golden flower (tetraploid) 3	10.154
CRA001975	CRR073297	Stem 1	14.901
	CRR073298	Stem 2	14.775
	CRR073299	Stem 3	16.811
	CRR073300	Leaf 1	15.700
	CRR073301	Leaf 2	14.320
	CRR073302	Leaf 3	14.796
	CRR073303	Juvenile bud 1	12.463
	CRR073304	Juvenile bud 2	5.068
	CRR073305	Juvenile bud 3	14.680
	CRR073306	Third green 1	2.854
	CRR073307	Third green 2	2.898
	CRR073308	Third green 3	3.443
	CRR073309	Second white 1	3.390
	CRR073310	Second white 2	2.775
	CRR073311	Second white 3	3.256
	CRR073312	Silver flowering 1	4.341
	CRR073313	Silver flowering 2	2.301
	CRR073314	Silver flowering 3	3.108
	CRR073315	Gold flowering 1	6.053
	CRR073316	Gold flowering 2	10.041
	CRR073317	Gold flowering 3	8.115
	CRR073318	Tawny withering 1	16.870
	CRR073319	Tawny withering 2	14.174
	CRR073320	Tawny withering 3	13.337