Detail information of GWHGAAZE009433


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP04043.10unnamed protein product [Coffea canephora]
Swissprottr|Q6Z3U3|Y7797_ORYSJ8E-169B3 domain-containing protein Os07g0679700
trEMBLtr|A0A068U8U9|A0A068U8U9_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313|EMBL:CDP04043.1}
TAIR10AT2G30470.13E-124high-level expression of sugar-inducible gene 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene110194496110200668-
GWHAAZE00000002mRNA110194496110200668-
GWHAAZE00000002exon110194496110195358-
GWHAAZE00000002exon110196482110196498-
GWHAAZE00000002exon110196636110196685-
GWHAAZE00000002exon110197048110197302-
GWHAAZE00000002exon110197395110197457-
GWHAAZE00000002exon110197559110197635-
GWHAAZE00000002exon110198002110198176-
GWHAAZE00000002exon110198254110198350-
GWHAAZE00000002exon110198563110199164-
GWHAAZE00000002exon110200363110200479-
GWHAAZE00000002exon110200564110200668-
GWHAAZE00000002CDS110200564110200668-
GWHAAZE00000002CDS110200363110200479-
GWHAAZE00000002CDS110198563110199164-
GWHAAZE00000002CDS110198254110198350-
GWHAAZE00000002CDS110198002110198176-
GWHAAZE00000002CDS110197559110197635-
GWHAAZE00000002CDS110197395110197457-
GWHAAZE00000002CDS110197048110197302-
GWHAAZE00000002CDS110196636110196685-
GWHAAZE00000002CDS110196482110196498-
GWHAAZE00000002CDS110194670110195358-
GWHAAZE00000002three_prime_UTR110194496110194669-
Transcript Sequence

Network for GWHGAAZE009433

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02362.22B32843827.20E-16
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyB3

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.079
SRR3591706second leaf7.682
SRR3591707mature leaf7.065
SRR3591708Shoot apex12.542
SRR3591709Stem7.486
SRR3591710White floral bud7.706
SRR3591711White flower7.635
SRR3591712Green floral bud4.729
SRR3591713Yellow flower7.179
SRP173429 SRR8316895Juvenile bud stage 3.644
SRR8316896Juvenile bud stage 5.374
SRR8316897Juvenile bud stage 2.265
SRR8316894Third green stage 2.001
SRR8316900Third green stage 5.260
SRR8316901Third green stage 4.977
SRR8316898Complete white stage 2.638
SRR8316899Complete white stage 9.611
SRR8316903Complete white stage 4.898
SRR8316902Silver flowering stage3.151
SRR8316904Silver flowering stage2.855
SRR8316905Silver flowering stage1.459
SRR8316906Gold flowering stage 6.730
SRR8316907Gold flowering stage 5.547
SRR8316908Gold flowering stage 6.077
SRP132670SRR6706286Control3.990
SRR6706287Light intensity 50%3.998
SRR6706288Light intensity 20%3.913
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.279
CNS0095593Slightly white alabastrum(diploid) 23.406
CNS0095594Slightly white alabastrum(diploid) 32.653
CNS0095595Whole white alabastrum(diploid) 22.567
CNS0095596Whole white alabastrum(diploid) 31.677
CNS0095597Whole white alabastrum(diploid) 42.127
CNS0095598Silvery flower (diploied) 15.230
CNS0095599Silvery flower (diploied) 26.112
CNS0095600Silvery flower (diploied) 36.315
CNS0095601Golden flower (diploid) 15.477
CNS0095602Golden flower (diploid) 26.240
CNS0095603Golden flower (diploid) 37.173
CNS0095604Slightly white alabastrum(tetraploid) 12.866
CNS0095605Slightly white alabastrum(tetraploid) 22.341
CNS0095606Slightly white alabastrum(tetraploid) 37.841
CNS0095607Whole white alabastrum(tetraploid) 12.128
CNS0095608Whole white alabastrum(tetraploid) 21.408
CNS0095609Whole white alabastrum(tetraploid) 33.725
CNS0095610Silvery flower (tetraploid) 15.271
CNS0095611Silvery flower (tetraploid) 27.887
CNS0095612Silvery flower (tetraploid) 37.047
CNS0095613Golden flower (tetraploid) 14.112
CNS0095614Golden flower (tetraploid) 25.915
CNS0095615Golden flower (tetraploid) 37.102
CRA001975CRR073297Stem 15.725
CRR073298Stem 25.341
CRR073299Stem 33.550
CRR073300Leaf 16.262
CRR073301Leaf 25.451
CRR073302Leaf 33.984
CRR073303Juvenile bud 14.088
CRR073304Juvenile bud 22.397
CRR073305Juvenile bud 35.539
CRR073306Third green 11.581
CRR073307Third green 21.235
CRR073308Third green 31.667
CRR073309Second white 12.303
CRR073310Second white 23.314
CRR073311Second white 34.369
CRR073312Silver flowering 15.807
CRR073313Silver flowering 24.993
CRR073314Silver flowering 34.020
CRR073315Gold flowering 13.750
CRR073316Gold flowering 25.548
CRR073317Gold flowering 32.429
CRR073318Tawny withering 15.245
CRR073319Tawny withering 23.894
CRR073320Tawny withering 33.836