Gene detail

Detail information of GWHGAAZE009417

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002269918.1	2.2506E-140	PREDICTED: peroxidase 4 [Vitis vinifera]
Swissprot	tr\|A7NY33\|PER4_VITVI	1E-142	Peroxidase 4 {ECO:0000250\|UniProtKB:Q42578} (Precursor)
trEMBL	tr\|A0A067DSE4\|A0A067DSE4_CITSI	4E-147	Uncharacterized protein {ECO:0000313\|EMBL:KDO41521.1}
TAIR10	AT5G05340.1	2E-93	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	109788584	109791024	+
GWHAAZE00000002	mRNA	109788584	109791024	+
GWHAAZE00000002	exon	109788584	109788805	+
GWHAAZE00000002	exon	109789099	109789290	+
GWHAAZE00000002	exon	109789478	109789646	+
GWHAAZE00000002	exon	109790750	109791024	+
GWHAAZE00000002	CDS	109788584	109788805	+
GWHAAZE00000002	CDS	109789099	109789290	+
GWHAAZE00000002	CDS	109789478	109789646	+
GWHAAZE00000002	CDS	109790750	109791024	+

Transcript Sequence
>GWHTAAZE009427 ATGGTTTCTTTGACTTCTTCTTCTTCAATGGCCATTATGGCCATAATTGTGGTTGTACTCTCAACGGGTAATTCTTGTGCGCAACTCTCAACCAAATTTTACTCTAAAACATGTCCAAAGTTATTGAGTACCGTAAAACCCGTAGTTCAATCTGCAGTGTCTAATGAAAAGCGCATGGGTGCTTCTCTCCTTCGTCTCCATTTTCATGATTGTTTCGTCGGTGGTTGTGATGGATCAATACTTCTTGATGACACATCTTCCTTTACGGGAGAGAAGACTGCTCCTCCCAATAATAACACCATCAGAGGATATAGCGTAATTGACAATATCAAATCCAAGGTAGAGGAAGTGTGTCCCGGTGTGGTGTCATGCGCTGATATTGTAGCCTTAGCTGCCCGTGACTCTGTTGTTGCTCTTGCAGGACCAAATTGGGAAGTAAAACTAGGAAGAAGGGATTCAAAGACAGCAAGCCTATCAGCTGCAAATAGTGGAAGTATACCTTCTCCCTCTTATTCCCTTAGTAATCTCATCAACAGATTCCAAGCTAAAGGTCTCTCTACCAGGGATATGGTTGCCTTATCAGGCTCTGGAGACAACAATTTATCCCCATTAGACCTTCAAACTCCCACTGATTTCGACAACGCCTATTACAAGAACCTAATTGATCAAAAGGGCCTTCTTCACTCCGATCAGCAGCTTCACAGCGGTGGATCCACTGATTCTGTTGTTGAAACTTACAGCAAAGATTCAAAGAAATTTGAATCCGATTTTGCTGCTGCTATGATCAAGATGGGTGATATTAGCCCCCTCACTGGGTCTAATGGTGAGATTAGGAAGAATTGTAGGAAGCCTAACTGA

Network for GWHGAAZE009417

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	46	249	7.90E-65

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.254
	SRR3591706	second leaf	1.161
	SRR3591707	mature leaf	0.349
	SRR3591708	Shoot apex	0.198
	SRR3591709	Stem	3.936
	SRR3591710	White floral bud	2.316
	SRR3591711	White flower	1.866
	SRR3591712	Green floral bud	2.967
	SRR3591713	Yellow flower	0.183
SRP173429	SRR8316895	Juvenile bud stage	0.149
	SRR8316896	Juvenile bud stage	0.492
	SRR8316897	Juvenile bud stage	0.701
	SRR8316894	Third green stage	0.219
	SRR8316900	Third green stage	1.242
	SRR8316901	Third green stage	0.915
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.073
	SRR8316903	Complete white stage	0.231
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.062
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.045
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.591
SRP132670	SRR6706286	Control	0.306
	SRR6706287	Light intensity 50%	0.466
	SRR6706288	Light intensity 20%	0.565
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.369
	CNS0095593	Slightly white alabastrum(diploid) 2	1.223
	CNS0095594	Slightly white alabastrum(diploid) 3	0.488
	CNS0095595	Whole white alabastrum(diploid) 2	0.486
	CNS0095596	Whole white alabastrum(diploid) 3	0.195
	CNS0095597	Whole white alabastrum(diploid) 4	0.361
	CNS0095598	Silvery flower (diploied) 1	0.033
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.182
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.098
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.040
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.009
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.172
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.187
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.270
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.191
	CNS0095610	Silvery flower (tetraploid) 1	0.831
	CNS0095611	Silvery flower (tetraploid) 2	0.646
	CNS0095612	Silvery flower (tetraploid) 3	0.480
	CNS0095613	Golden flower (tetraploid) 1	0.315
	CNS0095614	Golden flower (tetraploid) 2	0.534
	CNS0095615	Golden flower (tetraploid) 3	0.076
CRA001975	CRR073297	Stem 1	0.248
	CRR073298	Stem 2	0.090
	CRR073299	Stem 3	0.062
	CRR073300	Leaf 1	0.372
	CRR073301	Leaf 2	0.125
	CRR073302	Leaf 3	0.141
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.131
	CRR073305	Juvenile bud 3	0.229
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.221
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.625
	CRR073319	Tawny withering 2	0.809
	CRR073320	Tawny withering 3	0.222