Gene detail

Detail information of GWHGAAZE009334

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009606071.1	PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic-like isoform X2 [Nicotiana tomentosiformis]
Swissprot	tr\|P32069\|TRPX_ARATH	Anthranilate synthase alpha subunit 2, chloroplastic (Precursor)
trEMBL	tr\|W9RP72\|W9RP72_9ROSA	Anthranilate synthase component I-2 {ECO:0000313\|EMBL:EXC01464.1}
TAIR10	AT2G29690.1	anthranilate synthase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	108049927	108061475	+
GWHAAZE00000002	mRNA	108049927	108061475	+
GWHAAZE00000002	exon	108049927	108050015	+
GWHAAZE00000002	exon	108051679	108052015	+
GWHAAZE00000002	exon	108052821	108053005	+
GWHAAZE00000002	exon	108053479	108053668	+
GWHAAZE00000002	exon	108058269	108058420	+
GWHAAZE00000002	exon	108058703	108058818	+
GWHAAZE00000002	exon	108058920	108059166	+
GWHAAZE00000002	exon	108059255	108059311	+
GWHAAZE00000002	exon	108059550	108059702	+
GWHAAZE00000002	exon	108060158	108060238	+
GWHAAZE00000002	exon	108060375	108060461	+
GWHAAZE00000002	exon	108061149	108061475	+
GWHAAZE00000002	five_prime_UTR	108049927	108050015	+
GWHAAZE00000002	five_prime_UTR	108051679	108051789	+
GWHAAZE00000002	CDS	108051790	108052015	+
GWHAAZE00000002	CDS	108052821	108053005	+
GWHAAZE00000002	CDS	108053479	108053668	+
GWHAAZE00000002	CDS	108058269	108058420	+
GWHAAZE00000002	CDS	108058703	108058818	+
GWHAAZE00000002	CDS	108058920	108059166	+
GWHAAZE00000002	CDS	108059255	108059311	+
GWHAAZE00000002	CDS	108059550	108059702	+
GWHAAZE00000002	CDS	108060158	108060238	+
GWHAAZE00000002	CDS	108060375	108060461	+
GWHAAZE00000002	CDS	108061149	108061475	+

Transcript Sequence
>GWHTAAZE009344 CGACTTCTTCGAAGTGTTTCAAAAACGACGTCGATAAGCTTTCTCCAATTACATTTCCACAAAAAAATTAAAAAATCCAAGGAGCTGAGGATTTGTGTTGTTTGGTTACTCTGTTAAGAGATACACTACTCCAAATATAGTCCCCTGTATCTTTCTTGATTAAAACCTCCACAGTTCGAACAAACAAAGGACACCCAAATATGGCATCTCTAGCTCTCTCCGACTGTCCGGTTCCTTCCCGAATCTGCTCCTCCGTTCCCTCCAAATACCCTGTGGGCCCTACTTTTCTCAGTCTAGTCAAATCTCCGGTTCAACATTTTCATACTCCCAAATTCTCTTCGTTCTCATCTCCATCATTGCGTGTCAAATCTCCAGCTAATCGTGTTCATACTCTCAAATGCTCCGCACTTGCATCTGCATCATTAGTCGACCAGTCAGACAAGTTCAAGGAAGCTGCAAGTCATGGGAATTTGATTCCACTCTACAGAGCTATATTCTGTGATCACTTGACTCCAGTGCTAGCTTACCGATGTTTAGTTAAGGAAGATGACAGGGACGCCCCAAGCTTCTTGTTCGAGTCTGTGGAGCCTGGTTTGAAGGTTTCCAGCATAGGGCGCTATAGCGTGATTGGAGCTCAGCCAACTATGGAAATAGTTGCAAAAGAGAATATGGTGACAGTAATGGACCACCATGAAGGGAAAAGGACGGAGGAGATTGTAGAGGATCCCATGGATGTTCCTCGGAGGATCATGAAGGATTGGATACCCCAACGGATTGATGAGCTTCCTGACGCATTTTGTGGTGGATGGGTCGGGTATTTCTCATATGATACTGTACGTTACGTAGAGAAGAAAAAGCTACCATTCACAAATGCCCCCCAGGATGATAGAAACCTTCCCGATGTTCATCTTGGTCTTTATGATGATGTCATCATTTTTGATCATGTGGAGAAGAAAGCATATGTGATCCACTGGGTGCGAATGGAGCGATTTTCTTCTATTGATGAGGCCTTTAAACATGGAATGGATTGGTTGGAAAATTTAGTTTCCAGAGTGCATGATATAGTTCCCCCAAGGCTGTCTGCAGGGTCAATTAAATTATATACTAGCCTTTTCGGTCCGTCTTTGAAGAAATCAAGCATGACAAGCGACGCATACAAGGAGTCGGTGCTGAAGGCCAAAGAACATATTTTGGCTGGGGACATTTTCCAGATTGTGCTGAGTCAGCGTTTCGAAAGGCGGACTTTTGCAGACCCATTTGAAGTCTACCGAGCATTGAGGATTGTCAATCCTAGTCCGTACATGACTTATTTACAAGCTAGAGGGTGTATTCTGGTTGCTTCAAGTCCAGAAATTCTTACTCGTGTTAAAAAGAGAAAGGTAACTAACCGGCCCCTTGCTGGCACAATTAGAAGAGGGAAGACGCCGAAAGAAGATTATATGCTGGAAAAACAGCTTCTGAATGACCAAAAACAATGTGCGGAGCACATTATGCTGGTTGACTTGGGAAGGAATGATGTTGGAAAGGTCTCAAAACCTGGTTCCGTGAAAGTTGAAAAGCTAATGAACATTGAACGCTACTCCCATGTCATGCATATTAGCTCCACAGTCAGTGGAGAATTACTTGACGGATTAAGTAGCTGGGATGCTCTTCGTGCTGCATTGCCTGTTGGAACAGTTAGTGGGGCCCCAAAGGTGAAAGCGATGGAATTAATAGATGAATTAGAAGTGACTCGGCGTGGGCCATATAGTGGTGGCTTTGGAGGTATTTCATTCTCAGGTGATATGGACATAGCCCTTGCCTTGAGAACTATTGTCTTTCCCACTGGGACCCGCTATGATGCCATGTACTCGTATAAGGATGCTTCAAATAAACGGCGAGATTGGCTGGCTCACCTCCAAGCTGGAGCCGGCATAGTTGCTGACTCCGACCCCAGTGACGAACAGAGAGAATGTGAGAATAAAGCTGCTGGAATTGCTCGTGCTATTGATCTTGCAGAGTCATCATTTGTTGAGAAATGA

Network for GWHGAAZE009334

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04715.14	Anth_synt_I_N	101	255	9.30E-30
PF00425.19	Chorismate_bind	316	588	1.00E-81

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01657	trpE	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
		Phenazine biosynthesis	map00405
		Quorum sensing	map02024
		Biofilm formation - Pseudomonas aeruginosa	map02025

Gene Ontology

GO term	Ontology	Name
GO:0000162	biological_process	tryptophan biosynthetic process
GO:0009058	biological_process	biosynthetic process
GO:0004049	molecular_function	anthranilate synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.458
	SRR3591706	second leaf	14.409
	SRR3591707	mature leaf	15.070
	SRR3591708	Shoot apex	21.460
	SRR3591709	Stem	12.947
	SRR3591710	White floral bud	45.211
	SRR3591711	White flower	59.522
	SRR3591712	Green floral bud	53.183
	SRR3591713	Yellow flower	81.623
SRP173429	SRR8316895	Juvenile bud stage	24.623
	SRR8316896	Juvenile bud stage	36.068
	SRR8316897	Juvenile bud stage	14.938
	SRR8316894	Third green stage	14.978
	SRR8316900	Third green stage	66.787
	SRR8316901	Third green stage	50.451
	SRR8316898	Complete white stage	24.749
	SRR8316899	Complete white stage	49.062
	SRR8316903	Complete white stage	47.251
	SRR8316902	Silver flowering stage	63.981
	SRR8316904	Silver flowering stage	86.803
	SRR8316905	Silver flowering stage	56.623
	SRR8316906	Gold flowering stage	139.750
	SRR8316907	Gold flowering stage	122.869
	SRR8316908	Gold flowering stage	97.614
SRP132670	SRR6706286	Control	63.393
	SRR6706287	Light intensity 50%	70.473
	SRR6706288	Light intensity 20%	77.115
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.145
	CNS0095593	Slightly white alabastrum(diploid) 2	37.163
	CNS0095594	Slightly white alabastrum(diploid) 3	25.937
	CNS0095595	Whole white alabastrum(diploid) 2	33.357
	CNS0095596	Whole white alabastrum(diploid) 3	39.141
	CNS0095597	Whole white alabastrum(diploid) 4	26.363
	CNS0095598	Silvery flower (diploied) 1	26.816
	CNS0095599	Silvery flower (diploied) 2	29.658
	CNS0095600	Silvery flower (diploied) 3	93.850
	CNS0095601	Golden flower (diploid) 1	32.336
	CNS0095602	Golden flower (diploid) 2	77.788
	CNS0095603	Golden flower (diploid) 3	74.382
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.732
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.369
	CNS0095606	Slightly white alabastrum(tetraploid) 3	58.171
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.161
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.416
	CNS0095609	Whole white alabastrum(tetraploid) 3	80.021
	CNS0095610	Silvery flower (tetraploid) 1	158.690
	CNS0095611	Silvery flower (tetraploid) 2	203.588
	CNS0095612	Silvery flower (tetraploid) 3	530.235
	CNS0095613	Golden flower (tetraploid) 1	194.771
	CNS0095614	Golden flower (tetraploid) 2	229.078
	CNS0095615	Golden flower (tetraploid) 3	290.438
CRA001975	CRR073297	Stem 1	70.469
	CRR073298	Stem 2	63.590
	CRR073299	Stem 3	61.258
	CRR073300	Leaf 1	116.345
	CRR073301	Leaf 2	97.062
	CRR073302	Leaf 3	93.231
	CRR073303	Juvenile bud 1	106.207
	CRR073304	Juvenile bud 2	73.337
	CRR073305	Juvenile bud 3	104.871
	CRR073306	Third green 1	284.853
	CRR073307	Third green 2	124.085
	CRR073308	Third green 3	217.368
	CRR073309	Second white 1	127.192
	CRR073310	Second white 2	183.319
	CRR073311	Second white 3	291.543
	CRR073312	Silver flowering 1	170.978
	CRR073313	Silver flowering 2	134.876
	CRR073314	Silver flowering 3	123.540
	CRR073315	Gold flowering 1	33.539
	CRR073316	Gold flowering 2	57.282
	CRR073317	Gold flowering 3	34.181
	CRR073318	Tawny withering 1	26.381
	CRR073319	Tawny withering 2	30.488
	CRR073320	Tawny withering 3	24.936