Detail information of GWHGAAZE009322


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP09158.10unnamed protein product [Coffea canephora]
Swissprottr|A5JTQ3|XYL2_MEDSV6E-35Alpha-L-arabinofuranosidase (Precursor)
trEMBLtr|A0A068UNH4|A0A068UNH4_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_36 {ECO:0000313|EMBL:CDP09158.1}
TAIR10AT3G47000.10Glycosyl hydrolase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene107751616107758817-
GWHAAZE00000002mRNA107751616107758817-
GWHAAZE00000002exon107758277107758817-
GWHAAZE00000002exon107757180107757384-
GWHAAZE00000002exon107756965107757055-
GWHAAZE00000002exon107756075107756220-
GWHAAZE00000002exon107754450107754693-
GWHAAZE00000002exon107753770107753898-
GWHAAZE00000002exon107753498107753680-
GWHAAZE00000002exon107752616107752817-
GWHAAZE00000002exon107751616107752106-
GWHAAZE00000002five_prime_UTR107758428107758817-
GWHAAZE00000002CDS107758277107758427-
GWHAAZE00000002CDS107757180107757384-
GWHAAZE00000002CDS107756965107757055-
GWHAAZE00000002CDS107756075107756220-
GWHAAZE00000002CDS107754450107754693-
GWHAAZE00000002CDS107753770107753898-
GWHAAZE00000002CDS107753498107753680-
GWHAAZE00000002CDS107752616107752817-
GWHAAZE00000002CDS107751616107752106-
Transcript Sequence

Network for GWHGAAZE009322

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00933.22Glyco_hydro_3243607.30E-74
PF01915.23Glyco_hydro_3_C3976056.10E-36
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05349bglX Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500
Cyanoamino acid metabolismmap00460
Phenylpropanoid biosynthesismap00940

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.864
SRR3591706second leaf9.347
SRR3591707mature leaf15.855
SRR3591708Shoot apex12.733
SRR3591709Stem19.711
SRR3591710White floral bud13.984
SRR3591711White flower12.380
SRR3591712Green floral bud16.715
SRR3591713Yellow flower8.450
SRP173429 SRR8316895Juvenile bud stage 10.624
SRR8316896Juvenile bud stage 14.312
SRR8316897Juvenile bud stage 7.708
SRR8316894Third green stage 6.697
SRR8316900Third green stage 20.889
SRR8316901Third green stage 18.155
SRR8316898Complete white stage 8.938
SRR8316899Complete white stage 27.170
SRR8316903Complete white stage 13.203
SRR8316902Silver flowering stage5.977
SRR8316904Silver flowering stage7.814
SRR8316905Silver flowering stage3.114
SRR8316906Gold flowering stage 13.671
SRR8316907Gold flowering stage 12.714
SRR8316908Gold flowering stage 14.108
SRP132670SRR6706286Control17.787
SRR6706287Light intensity 50%19.015
SRR6706288Light intensity 20%21.845
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.962
CNS0095593Slightly white alabastrum(diploid) 212.034
CNS0095594Slightly white alabastrum(diploid) 313.364
CNS0095595Whole white alabastrum(diploid) 212.531
CNS0095596Whole white alabastrum(diploid) 314.125
CNS0095597Whole white alabastrum(diploid) 411.537
CNS0095598Silvery flower (diploied) 111.467
CNS0095599Silvery flower (diploied) 213.162
CNS0095600Silvery flower (diploied) 320.089
CNS0095601Golden flower (diploid) 111.567
CNS0095602Golden flower (diploid) 217.451
CNS0095603Golden flower (diploid) 318.094
CNS0095604Slightly white alabastrum(tetraploid) 119.026
CNS0095605Slightly white alabastrum(tetraploid) 215.776
CNS0095606Slightly white alabastrum(tetraploid) 325.417
CNS0095607Whole white alabastrum(tetraploid) 114.799
CNS0095608Whole white alabastrum(tetraploid) 213.235
CNS0095609Whole white alabastrum(tetraploid) 321.203
CNS0095610Silvery flower (tetraploid) 120.537
CNS0095611Silvery flower (tetraploid) 221.126
CNS0095612Silvery flower (tetraploid) 316.581
CNS0095613Golden flower (tetraploid) 110.999
CNS0095614Golden flower (tetraploid) 217.131
CNS0095615Golden flower (tetraploid) 313.035
CRA001975CRR073297Stem 117.903
CRR073298Stem 217.872
CRR073299Stem 315.523
CRR073300Leaf 120.334
CRR073301Leaf 218.842
CRR073302Leaf 316.896
CRR073303Juvenile bud 121.370
CRR073304Juvenile bud 217.238
CRR073305Juvenile bud 328.636
CRR073306Third green 17.062
CRR073307Third green 26.980
CRR073308Third green 38.660
CRR073309Second white 110.928
CRR073310Second white 27.309
CRR073311Second white 39.516
CRR073312Silver flowering 18.091
CRR073313Silver flowering 28.426
CRR073314Silver flowering 310.513
CRR073315Gold flowering 114.715
CRR073316Gold flowering 222.406
CRR073317Gold flowering 316.229
CRR073318Tawny withering 120.244
CRR073319Tawny withering 215.058
CRR073320Tawny withering 324.535