Gene detail

Detail information of GWHGAAZE009262

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP09078.1	1.0512E-113	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068UN78\|A0A068UN78_COFCA	4E-114	Coffea canephora DH200=94 genomic scaffold, scaffold_36 {ECO:0000313\|EMBL:CDP09078.1}
TAIR10	AT2G29070.2	1E-76	Ubiquitin fusion degradation UFD1 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	106631283	106632856	+
GWHAAZE00000002	mRNA	106631283	106632856	+
GWHAAZE00000002	exon	106631283	106631359	+
GWHAAZE00000002	exon	106631480	106631562	+
GWHAAZE00000002	exon	106631675	106631707	+
GWHAAZE00000002	exon	106632010	106632131	+
GWHAAZE00000002	exon	106632240	106632370	+
GWHAAZE00000002	exon	106632625	106632856	+
GWHAAZE00000002	CDS	106631283	106631359	+
GWHAAZE00000002	CDS	106631480	106631562	+
GWHAAZE00000002	CDS	106631675	106631707	+
GWHAAZE00000002	CDS	106632010	106632131	+
GWHAAZE00000002	CDS	106632240	106632370	+
GWHAAZE00000002	CDS	106632625	106632856	+

Transcript Sequence
>GWHTAAZE009272 ATGACTACTACTATCCTAGGGCTGCTTCGACCTTTGAACAGAATTATCGTTGTTATCCGGTCTCGTTCATCGAAAAGCTCAATTGTTATTTTGATTTTCCAACCCAAGTTAATTATAATTCTTTTTGAAATGCAGCCGCATCTGGAGAAGGGTGATAAAGTTATAATGCCTCCCTCTGCCCTTGATCGCCTTGCTTATTTACAGATAGATTACCCAATGTTATTTGAACTCAGTAATCCTTCTGCCGGTAAAATTACCCACTGCGGAGTGCTAGAATTTGTTGCCGACGAGGGTATAATATATTTACCATATTGGATGATGGAAAACATGCTCCTACAAGAGGGAGACATAGTGAATGTTAAGAACTCTAGCTTATCAAAAGGAACATATGTGAAGTTGCAGCCTCACACCAAGGACTTCTTAGATGTATCCAACCCCAAGGCCATCTTAGAGACAACATTGAGGAGCTACTCTTGTTTGACCACGGGTGACACTATTATGGTTGCTTATAATAACAAGAAGTTTTACATTGATATAGTAGAAACGAAACCCTCTGCTGCAATTAGCATTATTGAAACTGACTGTGAGGTGGACTTTGCTCCTCCACTTGATTATAAAGAACCTGAAAAACCTGCGAAGGCTGCTGCTCTTTCAAACAAGAAAGCACCAGAAGGTTAG

Network for GWHGAAZE009262

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03152.15	UFD1	44	202	1.50E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14016	UFD1	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.175
	SRR3591706	second leaf	16.144
	SRR3591707	mature leaf	30.117
	SRR3591708	Shoot apex	30.228
	SRR3591709	Stem	60.444
	SRR3591710	White floral bud	47.347
	SRR3591711	White flower	37.169
	SRR3591712	Green floral bud	45.408
	SRR3591713	Yellow flower	35.294
SRP173429	SRR8316895	Juvenile bud stage	24.045
	SRR8316896	Juvenile bud stage	38.297
	SRR8316897	Juvenile bud stage	19.031
	SRR8316894	Third green stage	15.961
	SRR8316900	Third green stage	44.503
	SRR8316901	Third green stage	42.501
	SRR8316898	Complete white stage	22.783
	SRR8316899	Complete white stage	76.429
	SRR8316903	Complete white stage	32.669
	SRR8316902	Silver flowering stage	19.682
	SRR8316904	Silver flowering stage	22.460
	SRR8316905	Silver flowering stage	10.412
	SRR8316906	Gold flowering stage	49.524
	SRR8316907	Gold flowering stage	40.618
	SRR8316908	Gold flowering stage	38.466
SRP132670	SRR6706286	Control	27.450
	SRR6706287	Light intensity 50%	31.363
	SRR6706288	Light intensity 20%	32.261
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.823
	CNS0095593	Slightly white alabastrum(diploid) 2	30.911
	CNS0095594	Slightly white alabastrum(diploid) 3	34.761
	CNS0095595	Whole white alabastrum(diploid) 2	38.486
	CNS0095596	Whole white alabastrum(diploid) 3	38.528
	CNS0095597	Whole white alabastrum(diploid) 4	49.864
	CNS0095598	Silvery flower (diploied) 1	28.646
	CNS0095599	Silvery flower (diploied) 2	26.148
	CNS0095600	Silvery flower (diploied) 3	40.114
	CNS0095601	Golden flower (diploid) 1	30.576
	CNS0095602	Golden flower (diploid) 2	44.224
	CNS0095603	Golden flower (diploid) 3	37.328
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.386
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.853
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.235
	CNS0095607	Whole white alabastrum(tetraploid) 1	53.511
	CNS0095608	Whole white alabastrum(tetraploid) 2	53.995
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.732
	CNS0095610	Silvery flower (tetraploid) 1	41.987
	CNS0095611	Silvery flower (tetraploid) 2	38.052
	CNS0095612	Silvery flower (tetraploid) 3	29.738
	CNS0095613	Golden flower (tetraploid) 1	27.963
	CNS0095614	Golden flower (tetraploid) 2	33.974
	CNS0095615	Golden flower (tetraploid) 3	36.257
CRA001975	CRR073297	Stem 1	16.713
	CRR073298	Stem 2	15.886
	CRR073299	Stem 3	15.056
	CRR073300	Leaf 1	25.745
	CRR073301	Leaf 2	19.759
	CRR073302	Leaf 3	16.947
	CRR073303	Juvenile bud 1	21.938
	CRR073304	Juvenile bud 2	19.341
	CRR073305	Juvenile bud 3	20.193
	CRR073306	Third green 1	7.841
	CRR073307	Third green 2	9.007
	CRR073308	Third green 3	10.309
	CRR073309	Second white 1	12.848
	CRR073310	Second white 2	15.724
	CRR073311	Second white 3	11.780
	CRR073312	Silver flowering 1	9.898
	CRR073313	Silver flowering 2	7.086
	CRR073314	Silver flowering 3	10.923
	CRR073315	Gold flowering 1	11.550
	CRR073316	Gold flowering 2	17.713
	CRR073317	Gold flowering 3	15.357
	CRR073318	Tawny withering 1	13.799
	CRR073319	Tawny withering 2	13.728
	CRR073320	Tawny withering 3	16.320