Gene detail

Detail information of GWHGAAZE009248

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002299870.1	0	Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
Swissprot	tr\|Q06548\|APK1A_ARATH	0	Protein kinase APK1A, chloroplastic (Precursor)
trEMBL	tr\|B9GJM9\|B9GJM9_POPTR	0	Protein kinase capable of phosphorylating tyrosine family protein {ECO:0000313\|EMBL:EEE84675.1}
TAIR10	AT2G28930.2	3E-152	protein kinase 1B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	106320671	106324261	+
GWHAAZE00000002	mRNA	106320671	106324261	+
GWHAAZE00000002	exon	106320671	106321030	+
GWHAAZE00000002	exon	106321433	106321568	+
GWHAAZE00000002	exon	106321656	106321798	+
GWHAAZE00000002	exon	106321952	106322075	+
GWHAAZE00000002	exon	106323535	106324261	+
GWHAAZE00000002	CDS	106320671	106321030	+
GWHAAZE00000002	CDS	106321433	106321568	+
GWHAAZE00000002	CDS	106321656	106321798	+
GWHAAZE00000002	CDS	106321952	106322075	+
GWHAAZE00000002	CDS	106323535	106323971	+
GWHAAZE00000002	three_prime_UTR	106323972	106324261	+

Transcript Sequence
>GWHTAAZE009258 ATGTGGATAATACAATATAAATTTGTATCATCAGGGGCAAATTCGCAATATGTTAGCACCAATGGGAATGATTTGAGCCGTTCGAGCAGCAAGGTCTCATCGGGGTTGGGCCCACCTACTCCAAGGAGTGAGGGTGAGATTTTGCAGTCCTCGAATTTGAAGACCTTTAGTTTTGCTGGCCTCAAAACGGCCACAAGGAACTTTCGTCCCGATAGTGTGTTGGGAGAAGGCGGTTTTGGCTCGGTTTTCAAGGGTTGGATCGACGAGCACTCGTTTATAGCTGCCAAGCCCGGGACGGGCATGGTCATTGCTGTCAAAAGGCTTAATCAAGAAAGTTTTCAAGGTCATAGAGAGTGGCTGGCAGAAGTAAATTATCTCGGGCAGCTTTATCATCCTCATCTTGTGAAATTGATTGGGTATTGCTATGAGGATGAACACCGGCTTTTGGTATATGAATTCATGCCCCGGGGCAGCTTGGAAAATCATTTGTTCAGAAGAGGTTCTTATTTCCAACCTCTTTCCTGGAACCTTCGTCTAAAGGTTGCCCTCGGAGCTGCAAAGGGGCTCGCTTTTCTCCATGGTGCCGAAACTAAAGTGATATATCGGGACTTCAAGACCTCAAATATTTTGCTTGATTCAAGCTACAATGCGAAGTTATCTGATTTTGGGTTGGCCAAGGACGGGCCTACAGGTGATAAAAGCCATGTATCTACAAGAGTCATGGGGACCTATGGATATGCCGCACCAGAATATCTGGCCACCGGTCATTTAACAGCCAAGAGTGACGTTTACAGCTTTGGTGTAGTACTTCTTGAAGTATTATCTGGCCGAAGGGCAGTGGACAAGAACAGACCGTCCGGTGAACACAACCTCGTGGAGTGGGCAAAACCGTACCTAGCCAACAAGCGCAAGGTCTTCCGAGTAATTGACAACCGACTCGAGGGTCAGTACTCGTTAGATGTGGCCCACACAGCGGCTAACCTAGCATTAAGGTGTCTGTCAACGGAACCCAAGTTCCGGCCTAACATGGATGAGGTGGTGAAAGAACTCGAGCGGCTTCAAGATTCGACAGAAACCGGGAACACACGTTGGAACCCTAATGGGGGGTCGCGCCCACGTAGACGAAGTGCGGGCGAAGCTATAAAGGCTAATAATGCTGTTGCTTATCCTAGGCCATCTAGTTCTCCCCTGTATACCTAGTGATTAGTCAATACTTGTTCACCAAGGGCTCTTTTTCTTGGAAGTATTATAGGTGGTTTGGTTACTCATCCAAGTGCTCAAGGACTGTAAAGTTGTTTTGGGTAAATGTGTTGTATTAAGAGCTGAGCTCTGTTGGTTTAACTCAAAATTGTAGGTGAGCTTGTAATGAGAAATGCCAGCAAGCTAGTTTGTGTACTAACTTATGACTACAACAAATGTAATACTGATTTGTGGCGTTAAGGGTGGTTCTATTGCTGGAAGAATTTTTATTGTTAAAATCCAGAAATGTG

Network for GWHGAAZE009248

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	72	350	2.70E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.714
	SRR3591706	second leaf	19.295
	SRR3591707	mature leaf	23.163
	SRR3591708	Shoot apex	30.114
	SRR3591709	Stem	9.679
	SRR3591710	White floral bud	20.411
	SRR3591711	White flower	31.903
	SRR3591712	Green floral bud	14.467
	SRR3591713	Yellow flower	38.603
SRP173429	SRR8316895	Juvenile bud stage	11.507
	SRR8316896	Juvenile bud stage	13.601
	SRR8316897	Juvenile bud stage	7.148
	SRR8316894	Third green stage	5.602
	SRR8316900	Third green stage	14.322
	SRR8316901	Third green stage	16.664
	SRR8316898	Complete white stage	6.848
	SRR8316899	Complete white stage	21.996
	SRR8316903	Complete white stage	11.978
	SRR8316902	Silver flowering stage	9.760
	SRR8316904	Silver flowering stage	10.999
	SRR8316905	Silver flowering stage	5.893
	SRR8316906	Gold flowering stage	32.719
	SRR8316907	Gold flowering stage	25.810
	SRR8316908	Gold flowering stage	25.313
SRP132670	SRR6706286	Control	19.007
	SRR6706287	Light intensity 50%	14.648
	SRR6706288	Light intensity 20%	15.533
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.090
	CNS0095593	Slightly white alabastrum(diploid) 2	15.814
	CNS0095594	Slightly white alabastrum(diploid) 3	11.805
	CNS0095595	Whole white alabastrum(diploid) 2	14.642
	CNS0095596	Whole white alabastrum(diploid) 3	8.839
	CNS0095597	Whole white alabastrum(diploid) 4	8.890
	CNS0095598	Silvery flower (diploied) 1	43.562
	CNS0095599	Silvery flower (diploied) 2	24.984
	CNS0095600	Silvery flower (diploied) 3	41.069
	CNS0095601	Golden flower (diploid) 1	49.177
	CNS0095602	Golden flower (diploid) 2	70.128
	CNS0095603	Golden flower (diploid) 3	64.543
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.384
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.450
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.523
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.315
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.050
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.573
	CNS0095610	Silvery flower (tetraploid) 1	26.210
	CNS0095611	Silvery flower (tetraploid) 2	40.888
	CNS0095612	Silvery flower (tetraploid) 3	11.490
	CNS0095613	Golden flower (tetraploid) 1	31.116
	CNS0095614	Golden flower (tetraploid) 2	33.740
	CNS0095615	Golden flower (tetraploid) 3	63.850
CRA001975	CRR073297	Stem 1	26.059
	CRR073298	Stem 2	24.476
	CRR073299	Stem 3	26.229
	CRR073300	Leaf 1	20.879
	CRR073301	Leaf 2	24.565
	CRR073302	Leaf 3	22.229
	CRR073303	Juvenile bud 1	14.240
	CRR073304	Juvenile bud 2	10.924
	CRR073305	Juvenile bud 3	26.094
	CRR073306	Third green 1	4.292
	CRR073307	Third green 2	4.607
	CRR073308	Third green 3	6.305
	CRR073309	Second white 1	2.124
	CRR073310	Second white 2	2.572
	CRR073311	Second white 3	2.385
	CRR073312	Silver flowering 1	2.890
	CRR073313	Silver flowering 2	1.531
	CRR073314	Silver flowering 3	3.082
	CRR073315	Gold flowering 1	102.693
	CRR073316	Gold flowering 2	107.055
	CRR073317	Gold flowering 3	83.732
	CRR073318	Tawny withering 1	34.357
	CRR073319	Tawny withering 2	28.155
	CRR073320	Tawny withering 3	34.517