Gene detail

Detail information of GWHGAAZE009247

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007205760.1	4.5049E-156	hypothetical protein PRUPE_ppa010312mg [Prunus persica]
Swissprot	tr\|P48495\|TPIS_PETHY	2E-145	Triosephosphate isomerase, cytosolic
trEMBL	tr\|M5VZS0\|M5VZS0_PRUPE	2E-156	Triosephosphate isomerase {ECO:0000256\|RuleBase:RU000517}
TAIR10	AT3G55440.1	4E-113	triosephosphate isomerase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	106279632	106283606	+
GWHAAZE00000002	mRNA	106279632	106283606	+
GWHAAZE00000002	exon	106279632	106279711	+
GWHAAZE00000002	exon	106280600	106280740	+
GWHAAZE00000002	exon	106280863	106280947	+
GWHAAZE00000002	exon	106281236	106281368	+
GWHAAZE00000002	exon	106281621	106281715	+
GWHAAZE00000002	exon	106282823	106282901	+
GWHAAZE00000002	exon	106283377	106283459	+
GWHAAZE00000002	exon	106283556	106283606	+
GWHAAZE00000002	CDS	106279632	106279711	+
GWHAAZE00000002	CDS	106280600	106280740	+
GWHAAZE00000002	CDS	106280863	106280947	+
GWHAAZE00000002	CDS	106281236	106281368	+
GWHAAZE00000002	CDS	106281621	106281715	+
GWHAAZE00000002	CDS	106282823	106282901	+
GWHAAZE00000002	CDS	106283377	106283459	+
GWHAAZE00000002	CDS	106283556	106283606	+

Transcript Sequence
>GWHTAAZE009257 AATGGAACAGCTGAGGAGGTGAAAAAAATTGTCACCACATTGAATGAAGCTGAAGTGCCTTCAGAAGATGTTGTGGGTAAATGTCATTTTCTTGCAGAGGTTGTGGTTAGCCCTCCATTTGTGTTTCTTCAATTGGTAAAAAGTTTATTGCGTCCTGATTTCCATGTTGCTGCACAAAATTGCTGGGTTCGGAAAGGAGGTGCCTTTACTGGCGAAGTTAGTGCTGAGATGCTTGTCAATTTGGGCGTTCCTTGGGTCATTCTTGGTCATTCTGAGAGAAGGCTCATATTAAATGAATCAAACGAGTTTGTTGGAGATAAAATTGCATATGCACTTTCTCAAGGCTTGAAAGTGATTGCTTGTGTCGGCGAGACTCTTGAGCAGCGAGAATCGGGCTCTACGATAGCTGTAGTTGCTGCACAAACAAAAGCAATTGCAGAGCGAATTTCCGACTGGTCAAATATTGTCTTGGCTTACGAACCAGTTTGGGCCATTGGAACAGGAAAGGTAGCTAGCCCTGCTCAGGCCCAGGAAGTCCATTTTGAATTGAGAAAATGGCTTAAAGAAAATGCCGGTGCTGAAGTTGCAGAATCTACACGAATCATTTATGGAGGTTCTGTGAACGGAGCAAACTGCAAAGAACTGGCAGCACAGCCAGATGTGGATGGATTTTTAGTTGGGGGAGCATCTCTAAAGCCCGAGTTCATTGACATAATCAAGTCTGCCACCACGACGAAGAATGCATAA

Network for GWHGAAZE009247

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00121.19	TIM	31	239	4.20E-80

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01803	TPI, tpiA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Fructose and mannose metabolism	map00051
		Inositol phosphate metabolism	map00562
		Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

GO term	Ontology	Name
GO:0006096	biological_process	glycolytic process
GO:0004807	molecular_function	triose-phosphate isomerase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	154.073
	SRR3591706	second leaf	100.881
	SRR3591707	mature leaf	59.880
	SRR3591708	Shoot apex	103.865
	SRR3591709	Stem	96.528
	SRR3591710	White floral bud	56.848
	SRR3591711	White flower	47.275
	SRR3591712	Green floral bud	98.593
	SRR3591713	Yellow flower	43.997
SRP173429	SRR8316895	Juvenile bud stage	66.442
	SRR8316896	Juvenile bud stage	87.727
	SRR8316897	Juvenile bud stage	59.782
	SRR8316894	Third green stage	36.687
	SRR8316900	Third green stage	147.391
	SRR8316901	Third green stage	116.630
	SRR8316898	Complete white stage	48.215
	SRR8316899	Complete white stage	158.048
	SRR8316903	Complete white stage	56.024
	SRR8316902	Silver flowering stage	29.009
	SRR8316904	Silver flowering stage	36.269
	SRR8316905	Silver flowering stage	16.462
	SRR8316906	Gold flowering stage	54.314
	SRR8316907	Gold flowering stage	53.074
	SRR8316908	Gold flowering stage	74.591
SRP132670	SRR6706286	Control	131.687
	SRR6706287	Light intensity 50%	122.535
	SRR6706288	Light intensity 20%	142.045
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	105.527
	CNS0095593	Slightly white alabastrum(diploid) 2	115.009
	CNS0095594	Slightly white alabastrum(diploid) 3	90.401
	CNS0095595	Whole white alabastrum(diploid) 2	102.777
	CNS0095596	Whole white alabastrum(diploid) 3	125.785
	CNS0095597	Whole white alabastrum(diploid) 4	96.256
	CNS0095598	Silvery flower (diploied) 1	86.408
	CNS0095599	Silvery flower (diploied) 2	90.386
	CNS0095600	Silvery flower (diploied) 3	74.455
	CNS0095601	Golden flower (diploid) 1	87.897
	CNS0095602	Golden flower (diploid) 2	74.705
	CNS0095603	Golden flower (diploid) 3	71.510
	CNS0095604	Slightly white alabastrum(tetraploid) 1	103.689
	CNS0095605	Slightly white alabastrum(tetraploid) 2	101.786
	CNS0095606	Slightly white alabastrum(tetraploid) 3	134.461
	CNS0095607	Whole white alabastrum(tetraploid) 1	69.893
	CNS0095608	Whole white alabastrum(tetraploid) 2	79.733
	CNS0095609	Whole white alabastrum(tetraploid) 3	125.264
	CNS0095610	Silvery flower (tetraploid) 1	96.082
	CNS0095611	Silvery flower (tetraploid) 2	104.741
	CNS0095612	Silvery flower (tetraploid) 3	74.629
	CNS0095613	Golden flower (tetraploid) 1	52.525
	CNS0095614	Golden flower (tetraploid) 2	85.943
	CNS0095615	Golden flower (tetraploid) 3	36.888
CRA001975	CRR073297	Stem 1	129.670
	CRR073298	Stem 2	125.258
	CRR073299	Stem 3	150.469
	CRR073300	Leaf 1	151.970
	CRR073301	Leaf 2	162.823
	CRR073302	Leaf 3	227.952
	CRR073303	Juvenile bud 1	235.527
	CRR073304	Juvenile bud 2	187.724
	CRR073305	Juvenile bud 3	179.056
	CRR073306	Third green 1	68.060
	CRR073307	Third green 2	74.657
	CRR073308	Third green 3	58.998
	CRR073309	Second white 1	55.534
	CRR073310	Second white 2	36.083
	CRR073311	Second white 3	22.522
	CRR073312	Silver flowering 1	15.967
	CRR073313	Silver flowering 2	30.167
	CRR073314	Silver flowering 3	19.939
	CRR073315	Gold flowering 1	152.864
	CRR073316	Gold flowering 2	165.703
	CRR073317	Gold flowering 3	110.056
	CRR073318	Tawny withering 1	134.075
	CRR073319	Tawny withering 2	120.963
	CRR073320	Tawny withering 3	156.157