Gene detail

Detail information of GWHGAAZE009206

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010651059.1	5.97065E-92	PREDICTED: transcription factor MYB59 [Vitis vinifera]
Swissprot	tr\|Q9LX82\|MYB48_ARATH	1E-81	Transcription factor MYB48
trEMBL	tr\|F6GV45\|F6GV45_VITVI	3E-94	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43604.1}
TAIR10	AT3G46130.1	3E-64	myb domain protein 48

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	105515699	105516776	-
GWHAAZE00000002	mRNA	105515699	105516776	-
GWHAAZE00000002	exon	105515699	105516152	-
GWHAAZE00000002	exon	105516377	105516506	-
GWHAAZE00000002	exon	105516659	105516776	-
GWHAAZE00000002	CDS	105516659	105516776	-
GWHAAZE00000002	CDS	105516377	105516506	-
GWHAAZE00000002	CDS	105515699	105516152	-

Transcript Sequence
>GWHTAAZE009216 ATGGTGCAAGAGGAAATTTGCAGAAAGGGACCATGGACTGAAAATGAAGATGTTCAATTGCTGTTCTATGTGAACTTGTTTGGAGATAGAAGATGGGATTTTATAGCAAAAGTGTCAGGTTTGAAGAGAACAGGAAAGAGTTGCAGGCTACGCTGGGTTAATTATCTTAATCCTGGTCTTAAACGGTCCAAAATGACCCCGAATGAAGAGCGACTCGTGCTAGACCTTCACACCAAATGGGGAAATAGATGGTCAAGAATTGCTCGAAAATTACCAGGACGAACGGATAACGAGATAAAGAATTACTGGAGAACTCATATGAGGAAGAAAGCTCAAGAGAAGAAGAAAGTCACGTCCCCTTCTTCATCACTTTCTAATTGTTCATCCTCATCGTCGATAAGTCATCTAGGAGATTCTGTCATGGAGACTAAGGGGCGAAGCTTTTACGACACTGGGGGAAAGAAGAGTGTTAGGGTCGAGGAAGTGGATGAAATATGGAACGAAATTGTTCTATCGGAAGATGAAGGCGCAATAAAACCAATTTATGATGGTTGTGGAGATGTTGCGTCCAATTTTTTTAGTCCAATTTTAGCCTCCCCGATATGGGACTATCGTCCAGATTCGCTATGGATGATTGATGAAGAAGAGAGCAAACTTTTTCTTCCCACAACTGAACAACTTACCATACCGTTTAGCAGCTAA

Network for GWHGAAZE009206

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	9	56	1.70E-13
PF00249.32	Myb_DNA-binding	62	106	1.60E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.235
	SRR3591706	second leaf	1.558
	SRR3591707	mature leaf	8.387
	SRR3591708	Shoot apex	1.005
	SRR3591709	Stem	1.095
	SRR3591710	White floral bud	1.655
	SRR3591711	White flower	1.194
	SRR3591712	Green floral bud	3.908
	SRR3591713	Yellow flower	0.348
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.048
	SRR8316900	Third green stage	0.211
	SRR8316901	Third green stage	0.379
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	2.127
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.568
	SRR6706287	Light intensity 50%	0.508
	SRR6706288	Light intensity 20%	0.454
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.349
	CNS0095593	Slightly white alabastrum(diploid) 2	0.218
	CNS0095594	Slightly white alabastrum(diploid) 3	0.502
	CNS0095595	Whole white alabastrum(diploid) 2	1.209
	CNS0095596	Whole white alabastrum(diploid) 3	0.327
	CNS0095597	Whole white alabastrum(diploid) 4	0.217
	CNS0095598	Silvery flower (diploied) 1	2.828
	CNS0095599	Silvery flower (diploied) 2	1.759
	CNS0095600	Silvery flower (diploied) 3	1.272
	CNS0095601	Golden flower (diploid) 1	1.705
	CNS0095602	Golden flower (diploid) 2	1.378
	CNS0095603	Golden flower (diploid) 3	0.946
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.169
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.265
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.042
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.256
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.475
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.316
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.165
	CNS0095612	Silvery flower (tetraploid) 3	0.039
	CNS0095613	Golden flower (tetraploid) 1	0.040
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.107
	CRR073298	Stem 2	0.056
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	1.215
	CRR073301	Leaf 2	1.431
	CRR073302	Leaf 3	0.059
	CRR073303	Juvenile bud 1	0.431
	CRR073304	Juvenile bud 2	0.407
	CRR073305	Juvenile bud 3	1.329
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	2.917
	CRR073319	Tawny withering 2	8.778
	CRR073320	Tawny withering 3	2.662