Gene detail

Detail information of GWHGAAZE009191

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284532.2	0	PREDICTED: probable NOT transcription complex subunit VIP2 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q52JK6\|VIP2_NICBE	3E-173	Probable NOT transcription complex subunit VIP2 (Fragment)
trEMBL	tr\|F6GTU9\|F6GTU9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43613.1}
TAIR10	AT1G07705.2	0	NOT2 / NOT3 / NOT5 family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	104851649	104860233	+
GWHAAZE00000002	mRNA	104851649	104860233	+
GWHAAZE00000002	exon	104851649	104851763	+
GWHAAZE00000002	exon	104851850	104852028	+
GWHAAZE00000002	exon	104852521	104852905	+
GWHAAZE00000002	exon	104854219	104854425	+
GWHAAZE00000002	exon	104854517	104854618	+
GWHAAZE00000002	exon	104855491	104855582	+
GWHAAZE00000002	exon	104855940	104856143	+
GWHAAZE00000002	exon	104856219	104856256	+
GWHAAZE00000002	exon	104856438	104856494	+
GWHAAZE00000002	exon	104858571	104858628	+
GWHAAZE00000002	exon	104859240	104859668	+
GWHAAZE00000002	exon	104860023	104860075	+
GWHAAZE00000002	exon	104860170	104860233	+
GWHAAZE00000002	CDS	104851649	104851763	+
GWHAAZE00000002	CDS	104851850	104852028	+
GWHAAZE00000002	CDS	104852521	104852905	+
GWHAAZE00000002	CDS	104854219	104854425	+
GWHAAZE00000002	CDS	104854517	104854618	+
GWHAAZE00000002	CDS	104855491	104855582	+
GWHAAZE00000002	CDS	104855940	104856143	+
GWHAAZE00000002	CDS	104856219	104856256	+
GWHAAZE00000002	CDS	104856438	104856494	+
GWHAAZE00000002	CDS	104858571	104858628	+
GWHAAZE00000002	CDS	104859240	104859668	+
GWHAAZE00000002	CDS	104860023	104860075	+
GWHAAZE00000002	CDS	104860170	104860233	+

Transcript Sequence
>GWHTAAZE009201 ATGCAGTCATCTCTGAACGGATCAGCTTCAAATCTTCAAGACAATACTGGCCGATCATTTGCTACATCTTTCTCTGCTCAATCTGGTGCAGCCTCTCCTGTTTTTCACCACTCAGGAACTATTCAGGGGTTGCACAATATTCATGGGACCTTTAATGTCCCCAACATGCCGGGCTCACTTGGGTCAAGAAATTCAACACTAAATAGTGTTCCTTCGAGTGGTGTTCAACAACCTAGTGGAAATCTTTCTAGTGGGCGGTTTGCATCAAATAACCTCCCTGTTGCTCTTTCTCAGATATCTCATGGCGGCTCGCACGTTCATTCAGGGATGACAAATAGGGGTGGTATGAATGTTGTTGGAAGCCCTGGTGGATATAGTAGTGGCACAAATGGTGTCGGTGGTTCTATTCCTGGGATCCTCCCAACTTCTGCAGCGATTGGTAACCGGAGTGCTGTTCCAGGGTTAGGGGTATCTCCAATTTTGGGGAACGCTGGTCCTCGGATTTCGAGCTCAGTTGGAAACATGGTAGGTGGCGGCAACATTGGGAGAAACATAAGCTCTGGTGGTGGTTTATCCGTGCCCGGTCTTGCTTCTCGCCTAAATCTTACAGCGAATAGTGGTTCTGGGAATTTAGGTGTACAGGGACCAAATAGATTAATGAGTGGCGTGCTTCAACAAGCTTCTCCGCAGGTAATTTCAATGCTGGGAAATTCCTATCCCACTGGTAACCCCTTGTCTCAGAATCATGTCCAAGCTGTGAATAACCTAAACTCTATGGGGATGATGAACGATGTGAACTCCAATGATGCTGCCCCTTTCGATATTAATGATTTTCCTCAGCTATCCAGCCGTCCCAATTCTGCTGGTGGACCTCAAGGACAGCTCGGTTCATTGAGAAAACAGGGTCTTGGTGTTAGTCCTATTGTTCAACAGAATCAAGAGTTCAGCATCCAAAATGAAGATTTTCCGGCTTTACCAGGATTTAAAGGTGGCAATGCTGATTATGCTATGGATATGCACCAGAAAGAACAACTTCACGACAATGCTGTTTCAATGATGCAGCAGCATCAACACTTCTCTATGGGGAGGTCTGGTGATTTCAACTTGGGGGGCACGTTTTCATCACATCGCCAGCAGCAGCAGCAACAACAACAACAACAACAACAACATGCTCCATCAGTGAGTAGTAGCGGTGTCTCCTTTTCATCTGTAAACAATCAGGATCTGCTCCATTTACATGGTTCAGAATTATTCCCAACTTCACATTCAAGCTATCACCCACAGGCCATTTGTGTCTTGACTTGTTGTGCTTATGGTGGTAGTGGAAGTCGGGTGGTGGGAGGGGCACCCGACACTGTGGCGGAACTTAGGCGCCTTAGGAACAAGGCCTCGAATCCGGATGTAGCTTTTCAATTTGTCTCCAACAAATCATTTCTCACCAGTAGACCTCCGGGGATAGGATTACGACCTCTTAACTCTCCAAATACGGTTTCTGGTATAGGAGGATCATATGACCAGCTTATGCAGCAGTATCAACAGCACCAGAACCCATCTCAGTTCCGCCTTCAGCAATTATCTGCTGTCAGTCAGTCATATAGGGATCAGGGCATGAAGTCCATGCAGGCTGCACAAGCGGCTTCGGACCCTTTTGGTTTGCTCGGTTTATTAAGCGTAATAAGGATGAGCGATCCTGATTTAACCTCTCTTGCACTCGGTATCGATTTGACAACGCTCGGTTTGAACTTGAACTCATCAGAAAATCTTCACAAGACGTTTGGTTCCCCGTGGTTGGATGAGCCTGCCAAAGGAGACCCGGAATTCAATGTGCCCCAATGTTATTATGCTAAGCAACCACCTCCCCTAAATCAAGGTTATTTCTCGAAGTTCCAGTTGGACACTTTGTTCTATATATTTTACAGCATGCCTAAAGACGAAGCGCAATTATATGCTGCAAATGAACTGTATGCTCTCTCATCCGTTTGA

Network for GWHGAAZE009191

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04153.19	NOT2_3_5	590	656	7.40E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12605	CNOT2, NOT2	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.369
	SRR3591706	second leaf	18.441
	SRR3591707	mature leaf	14.488
	SRR3591708	Shoot apex	24.220
	SRR3591709	Stem	19.268
	SRR3591710	White floral bud	20.892
	SRR3591711	White flower	25.852
	SRR3591712	Green floral bud	16.928
	SRR3591713	Yellow flower	27.662
SRP173429	SRR8316895	Juvenile bud stage	11.981
	SRR8316896	Juvenile bud stage	14.354
	SRR8316897	Juvenile bud stage	6.496
	SRR8316894	Third green stage	6.343
	SRR8316900	Third green stage	14.323
	SRR8316901	Third green stage	14.516
	SRR8316898	Complete white stage	7.287
	SRR8316899	Complete white stage	19.165
	SRR8316903	Complete white stage	14.884
	SRR8316902	Silver flowering stage	9.982
	SRR8316904	Silver flowering stage	14.711
	SRR8316905	Silver flowering stage	6.824
	SRR8316906	Gold flowering stage	23.083
	SRR8316907	Gold flowering stage	22.146
	SRR8316908	Gold flowering stage	23.308
SRP132670	SRR6706286	Control	18.095
	SRR6706287	Light intensity 50%	17.507
	SRR6706288	Light intensity 20%	17.962
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.345
	CNS0095593	Slightly white alabastrum(diploid) 2	9.503
	CNS0095594	Slightly white alabastrum(diploid) 3	7.966
	CNS0095595	Whole white alabastrum(diploid) 2	7.963
	CNS0095596	Whole white alabastrum(diploid) 3	4.570
	CNS0095597	Whole white alabastrum(diploid) 4	7.412
	CNS0095598	Silvery flower (diploied) 1	15.442
	CNS0095599	Silvery flower (diploied) 2	12.040
	CNS0095600	Silvery flower (diploied) 3	27.102
	CNS0095601	Golden flower (diploid) 1	11.870
	CNS0095602	Golden flower (diploid) 2	27.290
	CNS0095603	Golden flower (diploid) 3	26.734
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.783
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.178
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.930
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.833
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.521
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.585
	CNS0095610	Silvery flower (tetraploid) 1	28.766
	CNS0095611	Silvery flower (tetraploid) 2	31.077
	CNS0095612	Silvery flower (tetraploid) 3	28.642
	CNS0095613	Golden flower (tetraploid) 1	18.284
	CNS0095614	Golden flower (tetraploid) 2	26.935
	CNS0095615	Golden flower (tetraploid) 3	32.852
CRA001975	CRR073297	Stem 1	22.446
	CRR073298	Stem 2	18.772
	CRR073299	Stem 3	16.708
	CRR073300	Leaf 1	21.182
	CRR073301	Leaf 2	20.368
	CRR073302	Leaf 3	13.670
	CRR073303	Juvenile bud 1	17.491
	CRR073304	Juvenile bud 2	12.339
	CRR073305	Juvenile bud 3	21.254
	CRR073306	Third green 1	12.306
	CRR073307	Third green 2	9.906
	CRR073308	Third green 3	11.851
	CRR073309	Second white 1	14.064
	CRR073310	Second white 2	15.478
	CRR073311	Second white 3	21.781
	CRR073312	Silver flowering 1	20.747
	CRR073313	Silver flowering 2	20.606
	CRR073314	Silver flowering 3	19.341
	CRR073315	Gold flowering 1	13.185
	CRR073316	Gold flowering 2	21.480
	CRR073317	Gold flowering 3	15.266
	CRR073318	Tawny withering 1	14.130
	CRR073319	Tawny withering 2	12.455
	CRR073320	Tawny withering 3	15.209