Detail information of GWHGAAZE009128


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP07136.12.4055E-99unnamed protein product [Coffea canephora]
Swissprottr|Q9SF29|SYP71_ARATH8E-89Syntaxin-71
trEMBLtr|A0A068UF70|A0A068UF70_COFCA9E-100Coffea canephora DH200=94 genomic scaffold, scaffold_24 {ECO:0000313|EMBL:CDP07136.1}
TAIR10AT3G09740.13E-59syntaxin of plants 71

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene103090253103095014-
GWHAAZE00000002mRNA103090253103095014-
GWHAAZE00000002exon103090253103090431-
GWHAAZE00000002exon103091399103091461-
GWHAAZE00000002exon103091569103091613-
GWHAAZE00000002exon103091756103091943-
GWHAAZE00000002exon103092048103092198-
GWHAAZE00000002exon103093929103094054-
GWHAAZE00000002exon103094859103095014-
GWHAAZE00000002CDS103094859103095014-
GWHAAZE00000002CDS103093929103094054-
GWHAAZE00000002CDS103092048103092198-
GWHAAZE00000002CDS103091756103091943-
GWHAAZE00000002CDS103091569103091613-
GWHAAZE00000002CDS103091399103091461-
GWHAAZE00000002CDS103090345103090431-
GWHAAZE00000002three_prime_UTR103090253103090344-
Transcript Sequence

Network for GWHGAAZE009128

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08506SYP7 SNARE interactions in vesicular transport map04130

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.093
SRR3591708Shoot apex0.167
SRR3591709Stem0.394
SRR3591710White floral bud36.592
SRR3591711White flower4.798
SRR3591712Green floral bud48.058
SRR3591713Yellow flower3.341
SRP173429 SRR8316895Juvenile bud stage 2.253
SRR8316896Juvenile bud stage 11.881
SRR8316897Juvenile bud stage 3.782
SRR8316894Third green stage 5.946
SRR8316900Third green stage 44.123
SRR8316901Third green stage 44.167
SRR8316898Complete white stage 1.096
SRR8316899Complete white stage 1.460
SRR8316903Complete white stage 1.579
SRR8316902Silver flowering stage2.658
SRR8316904Silver flowering stage3.867
SRR8316905Silver flowering stage2.237
SRR8316906Gold flowering stage 3.348
SRR8316907Gold flowering stage 3.767
SRR8316908Gold flowering stage 1.072
SRP132670SRR6706286Control26.173
SRR6706287Light intensity 50%25.706
SRR6706288Light intensity 20%22.250
CNP0000432CNS0095592Slightly white alabastrum(diploid) 126.256
CNS0095593Slightly white alabastrum(diploid) 220.623
CNS0095594Slightly white alabastrum(diploid) 323.282
CNS0095595Whole white alabastrum(diploid) 262.405
CNS0095596Whole white alabastrum(diploid) 373.041
CNS0095597Whole white alabastrum(diploid) 479.943
CNS0095598Silvery flower (diploied) 13.649
CNS0095599Silvery flower (diploied) 210.532
CNS0095600Silvery flower (diploied) 33.954
CNS0095601Golden flower (diploid) 15.427
CNS0095602Golden flower (diploid) 22.912
CNS0095603Golden flower (diploid) 32.293
CNS0095604Slightly white alabastrum(tetraploid) 151.125
CNS0095605Slightly white alabastrum(tetraploid) 246.519
CNS0095606Slightly white alabastrum(tetraploid) 30.422
CNS0095607Whole white alabastrum(tetraploid) 1102.075
CNS0095608Whole white alabastrum(tetraploid) 2131.699
CNS0095609Whole white alabastrum(tetraploid) 372.106
CNS0095610Silvery flower (tetraploid) 12.786
CNS0095611Silvery flower (tetraploid) 24.639
CNS0095612Silvery flower (tetraploid) 314.810
CNS0095613Golden flower (tetraploid) 13.065
CNS0095614Golden flower (tetraploid) 21.217
CNS0095615Golden flower (tetraploid) 37.411
CRA001975CRR073297Stem 16.525
CRR073298Stem 27.092
CRR073299Stem 34.887
CRR073300Leaf 131.252
CRR073301Leaf 225.155
CRR073302Leaf 316.259
CRR073303Juvenile bud 135.225
CRR073304Juvenile bud 233.668
CRR073305Juvenile bud 32.959
CRR073306Third green 116.889
CRR073307Third green 222.688
CRR073308Third green 318.623
CRR073309Second white 12.488
CRR073310Second white 23.780
CRR073311Second white 34.112
CRR073312Silver flowering 119.722
CRR073313Silver flowering 218.667
CRR073314Silver flowering 310.930
CRR073315Gold flowering 119.972
CRR073316Gold flowering 27.504
CRR073317Gold flowering 310.920
CRR073318Tawny withering 117.629
CRR073319Tawny withering 218.152
CRR073320Tawny withering 314.319