Gene detail

Detail information of GWHGAAZE009073

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU37042.1	0	hypothetical protein MIMGU_mgv1a004219mg [Erythranthe guttata]
Swissprot	tr\|Q8GW72\|FUCO1_ARATH	0	Alpha-L-fucosidase 1 (Precursor)
trEMBL	tr\|A0A022R9N6\|A0A022R9N6_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU37042.1}
TAIR10	AT2G28100.1	6E-165	alpha-L-fucosidase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	101287965	101292037	+
GWHAAZE00000002	mRNA	101287965	101292037	+
GWHAAZE00000002	exon	101287965	101288191	+
GWHAAZE00000002	exon	101288605	101288855	+
GWHAAZE00000002	exon	101290278	101290514	+
GWHAAZE00000002	exon	101291488	101292037	+
GWHAAZE00000002	five_prime_UTR	101287965	101288047	+
GWHAAZE00000002	CDS	101288048	101288191	+
GWHAAZE00000002	CDS	101288605	101288855	+
GWHAAZE00000002	CDS	101290278	101290514	+
GWHAAZE00000002	CDS	101291488	101292037	+

Transcript Sequence
>GWHTAAZE009083 ATCCAAACAACCCATTTCCCAAATCCTCATTTCCAATTTTGCCCATCCCAACCTCACAGCAACTTCAATGGCAGCTCTCAGAGATGGCCCTCTTCCTCCACTTTGGCCCCAACACCTTCACCGACACCGAGTGGGGCACCGGCCATGCCGATCCCTCGGTCTTCGATCCAACGGCCCTCAATGCCACCCAGTGGGTCCCTGTTGCAAAGGAAAATGGATTTTCTCGGGTAATCTTGACAGCCAAACACCATGATGCGTTCTGTTTGTGGCCCTCTGAGTACACCGATTACTCTGTGAAATCTAGTTCTTGGAAGAATGGGAGTGGGGATGTGGTGGGTGAATTGGCTGAGGCTGCTAGAATTGCTGGGATTCAATTGGGGCTTTATCTATCTCCTTGGGATAGGCACGAGGAGACTTACGGGAAGACACTGGAGTATAATGAGTATTATATGGGGCAAATGACTGAGTTGCTCACTAAATATGGTGTGATAAAGGAGGTATTTTTGGATGGTGCAAAAGGGGAGGGAGAGAAGAACATGGAGTACTTCTTTGATGACTGGTTTAGTCTCATTAAGCAACTGCAGCCTGGTGCCGTCATTTTCTCTGAGGCCGGTCCAGATACCAGATGGGTTGGAGACGAGGGCGGTTTTGCGGGGACCACTTGCTGGTCCCTTTTCAACAGAAGTAATGCAAAGATCGGCGGCACTGATACCAGCTATTTACAAGGAGGAGACCCAATTGGCCATGATTGGGTACCCGCCGAGTGCGACGTCTCCATCAGACCAAGCTGGTTTTGGCACGCATCCGAAGTCCCAAAATCCCCAATGGAGCTTCTCGACTTGTACTACAAATCCGATGGTCGAAACTGCCTCTTGCTACTAAACATGCCTCCAAACTCATCAGGTCTCATATCCGAACAAGATGTACAAGTCCTTAGAGAATTCAACAAACTCCGAACCTCGATATTCACCCTTAATTATGCTCAAAATGCCCTCGTCTCCGCCAGCAGCACCCGAGGTGGGCTCGGCGATCCCCAGTTTTCTTCCCAACGCGTCCTTGAAGAAGGCATTTACACCTACTGGGCTCTGAATAAGAACCAAACGCATTGGACATTGTACTTTAACTTTAATGAAATAGTGACTTTCAATCTTTTGCTAGTTCAAGAGCCGATTCAAATGGGGCAGAGGATTATTGCGTTTCATTTGGATATACCGTTGGGTACCGTAGGCTGTTGCTTTTTCCAAAGGTGGATTCTTCTCGATTGA

Network for GWHGAAZE009073

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01120.18	Alpha_L_fucos	25	287	3.90E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01206	FUCA	Other glycan degradation	map00511
K01206	FUCA	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004560	molecular_function	alpha-L-fucosidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.278
	SRR3591706	second leaf	2.482
	SRR3591707	mature leaf	1.951
	SRR3591708	Shoot apex	3.306
	SRR3591709	Stem	2.981
	SRR3591710	White floral bud	2.760
	SRR3591711	White flower	1.387
	SRR3591712	Green floral bud	3.143
	SRR3591713	Yellow flower	1.055
SRP173429	SRR8316895	Juvenile bud stage	17.466
	SRR8316896	Juvenile bud stage	14.229
	SRR8316897	Juvenile bud stage	12.088
	SRR8316894	Third green stage	4.900
	SRR8316900	Third green stage	9.519
	SRR8316901	Third green stage	10.157
	SRR8316898	Complete white stage	2.787
	SRR8316899	Complete white stage	8.968
	SRR8316903	Complete white stage	4.628
	SRR8316902	Silver flowering stage	2.647
	SRR8316904	Silver flowering stage	4.338
	SRR8316905	Silver flowering stage	1.772
	SRR8316906	Gold flowering stage	4.571
	SRR8316907	Gold flowering stage	5.953
	SRR8316908	Gold flowering stage	5.156
SRP132670	SRR6706286	Control	10.793
	SRR6706287	Light intensity 50%	12.718
	SRR6706288	Light intensity 20%	11.774
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.157
	CNS0095593	Slightly white alabastrum(diploid) 2	8.104
	CNS0095594	Slightly white alabastrum(diploid) 3	7.964
	CNS0095595	Whole white alabastrum(diploid) 2	8.010
	CNS0095596	Whole white alabastrum(diploid) 3	8.232
	CNS0095597	Whole white alabastrum(diploid) 4	6.887
	CNS0095598	Silvery flower (diploied) 1	5.020
	CNS0095599	Silvery flower (diploied) 2	5.028
	CNS0095600	Silvery flower (diploied) 3	3.002
	CNS0095601	Golden flower (diploid) 1	3.904
	CNS0095602	Golden flower (diploid) 2	3.220
	CNS0095603	Golden flower (diploid) 3	3.474
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.718
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.015
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.656
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.936
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.566
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.800
	CNS0095610	Silvery flower (tetraploid) 1	7.394
	CNS0095611	Silvery flower (tetraploid) 2	5.010
	CNS0095612	Silvery flower (tetraploid) 3	5.419
	CNS0095613	Golden flower (tetraploid) 1	2.857
	CNS0095614	Golden flower (tetraploid) 2	3.650
	CNS0095615	Golden flower (tetraploid) 3	2.440
CRA001975	CRR073297	Stem 1	20.550
	CRR073298	Stem 2	12.444
	CRR073299	Stem 3	4.629
	CRR073300	Leaf 1	8.844
	CRR073301	Leaf 2	9.066
	CRR073302	Leaf 3	1.670
	CRR073303	Juvenile bud 1	1.141
	CRR073304	Juvenile bud 2	0.891
	CRR073305	Juvenile bud 3	1.589
	CRR073306	Third green 1	1.067
	CRR073307	Third green 2	0.621
	CRR073308	Third green 3	0.536
	CRR073309	Second white 1	0.100
	CRR073310	Second white 2	0.478
	CRR073311	Second white 3	0.159
	CRR073312	Silver flowering 1	0.084
	CRR073313	Silver flowering 2	0.228
	CRR073314	Silver flowering 3	0.215
	CRR073315	Gold flowering 1	0.517
	CRR073316	Gold flowering 2	2.372
	CRR073317	Gold flowering 3	0.324
	CRR073318	Tawny withering 1	3.664
	CRR073319	Tawny withering 2	2.962
	CRR073320	Tawny withering 3	6.194