Gene detail

Detail information of GWHGAAZE008989

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009606006.1	1.2292E-111	PREDICTED: low molecular weight phosphotyrosine protein phosphatase [Nicotiana tomentosiformis]
trEMBL	tr\|A0A067EBT1\|A0A067EBT1_CITSI	1E-111	Uncharacterized protein {ECO:0000313\|EMBL:KDO51340.1}
TAIR10	AT3G44620.1	8E-74	protein tyrosine phosphatases;protein tyrosine phosphatases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	99129868	99134498	-
GWHAAZE00000002	mRNA	99129868	99134498	-
GWHAAZE00000002	exon	99134066	99134498	-
GWHAAZE00000002	exon	99133099	99133234	-
GWHAAZE00000002	exon	99132608	99132675	-
GWHAAZE00000002	exon	99132188	99132274	-
GWHAAZE00000002	exon	99129868	99130244	-
GWHAAZE00000002	five_prime_UTR	99134441	99134498	-
GWHAAZE00000002	CDS	99134066	99134440	-
GWHAAZE00000002	CDS	99133099	99133234	-
GWHAAZE00000002	CDS	99132608	99132675	-
GWHAAZE00000002	CDS	99132188	99132274	-
GWHAAZE00000002	CDS	99130167	99130244	-
GWHAAZE00000002	three_prime_UTR	99129868	99130166	-

Transcript Sequence
>GWHTAAZE008999 ATTACTTTCATTCCAGCATTGTTTCCAAATAAACAAATTCCAGAGACGAGCGCAAGTGATGAGGGCATTGTACAGGACAGTGCTCCCAACACCTCCTCCCAATTCCACCAAATCCCCATTTTCCCATTTTCTCTCTCTAAAAACCCCAATTCTTCTCTCTCCTCCTAAACAATTCTTCCCATCTCTCCAAAATTTTAACCCTTTACACTCAAAGATTGCCAGACCCATCATAATCACATCATCATCATCAATGGCTTCTTCAACCACAGAAACAGAGGCAAAGACCAAGAAACCATTCTCTGTCCTCTTTGTGTGCTTGGGCAACATCTGTAGAAGCCCAGCTGCTGAGGGTGTTTTCAGGGATTTAGTCAAGAAAAGGGGTCTTGATTCTAAGTTCACCATTGATTCTGCTGGTACCATTAATTACCATGAGGGTAATGAAGCAGATCCTAGAATGAGGGCTGCCTCTAAAAGGCGTGGAATTCAGATTACTTCCTTATCCAGGCCGATTAAACCCTCCGATTTTGTTGAATTTGATCTTATTCTTGCAATGGACAGGCAAAACAAAGAGGATATACTAGCGGCTCTCAAGAGGTGGAGCTTCAAGGAGACCTTACCGGCTGATGCATATAAAAAGGTCCGCTTAATGTGCTCTTACTGTAAGAAGCATGAAGAAACTGAAGTCCCAGATCCTTATTATGGAGGAGCACAAGGTTTCGAGAAGGTTTTAGATTTACTTGTAGATGGTTGCGAATCACTTTTGGAAAGCATTTTGGCAGAGAACCCAAGCATCTCTGCTTAAAATTCCAGGGTTCTGTTTTGAGAAAATCACACGTATAATTTTTCTTTTCTTTTCTGCCAAACAATGTACATTTTTCAGTTACTCTGAAGAAATGCGCAGTAGCCCCATTTATCCAGAACGTGAAAACCCACAGCTGAATCCTGTGGAGATCTTGCACAATGATATGAATATTTGTATTTGTTCGCATTGTTTTTATGTGTTTGTGGTGACGACGACTGAGTGATTGGTATCATAAGGCGTTGCATATGAGCCTCTACCTATAACTGTATTTTCGTTCTTCTTGGTTGTATGTTTTCAAC

Network for GWHGAAZE008989

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01451.22	LMWPc	82	235	2.90E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01104	E3.1.3.48	Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0006470	biological_process	protein dephosphorylation
GO:0004725	molecular_function	protein tyrosine phosphatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.538
	SRR3591706	second leaf	36.488
	SRR3591707	mature leaf	42.093
	SRR3591708	Shoot apex	36.795
	SRR3591709	Stem	27.197
	SRR3591710	White floral bud	40.078
	SRR3591711	White flower	45.606
	SRR3591712	Green floral bud	49.218
	SRR3591713	Yellow flower	47.405
SRP173429	SRR8316895	Juvenile bud stage	26.492
	SRR8316896	Juvenile bud stage	34.412
	SRR8316897	Juvenile bud stage	17.153
	SRR8316894	Third green stage	15.253
	SRR8316900	Third green stage	61.259
	SRR8316901	Third green stage	50.648
	SRR8316898	Complete white stage	23.033
	SRR8316899	Complete white stage	59.413
	SRR8316903	Complete white stage	29.610
	SRR8316902	Silver flowering stage	20.064
	SRR8316904	Silver flowering stage	32.728
	SRR8316905	Silver flowering stage	17.937
	SRR8316906	Gold flowering stage	51.142
	SRR8316907	Gold flowering stage	56.438
	SRR8316908	Gold flowering stage	45.620
SRP132670	SRR6706286	Control	29.535
	SRR6706287	Light intensity 50%	33.549
	SRR6706288	Light intensity 20%	36.065
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.335
	CNS0095593	Slightly white alabastrum(diploid) 2	40.696
	CNS0095594	Slightly white alabastrum(diploid) 3	31.586
	CNS0095595	Whole white alabastrum(diploid) 2	34.961
	CNS0095596	Whole white alabastrum(diploid) 3	39.318
	CNS0095597	Whole white alabastrum(diploid) 4	38.455
	CNS0095598	Silvery flower (diploied) 1	26.713
	CNS0095599	Silvery flower (diploied) 2	30.485
	CNS0095600	Silvery flower (diploied) 3	40.404
	CNS0095601	Golden flower (diploid) 1	34.107
	CNS0095602	Golden flower (diploid) 2	37.290
	CNS0095603	Golden flower (diploid) 3	32.619
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.174
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.813
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.915
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.878
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.361
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.453
	CNS0095610	Silvery flower (tetraploid) 1	49.535
	CNS0095611	Silvery flower (tetraploid) 2	59.304
	CNS0095612	Silvery flower (tetraploid) 3	61.999
	CNS0095613	Golden flower (tetraploid) 1	44.280
	CNS0095614	Golden flower (tetraploid) 2	48.302
	CNS0095615	Golden flower (tetraploid) 3	55.125
CRA001975	CRR073297	Stem 1	25.668
	CRR073298	Stem 2	21.002
	CRR073299	Stem 3	26.549
	CRR073300	Leaf 1	25.152
	CRR073301	Leaf 2	20.451
	CRR073302	Leaf 3	26.270
	CRR073303	Juvenile bud 1	29.432
	CRR073304	Juvenile bud 2	32.096
	CRR073305	Juvenile bud 3	29.111
	CRR073306	Third green 1	26.118
	CRR073307	Third green 2	19.793
	CRR073308	Third green 3	18.475
	CRR073309	Second white 1	43.299
	CRR073310	Second white 2	27.843
	CRR073311	Second white 3	26.497
	CRR073312	Silver flowering 1	22.306
	CRR073313	Silver flowering 2	22.420
	CRR073314	Silver flowering 3	20.133
	CRR073315	Gold flowering 1	41.404
	CRR073316	Gold flowering 2	40.934
	CRR073317	Gold flowering 3	39.094
	CRR073318	Tawny withering 1	19.180
	CRR073319	Tawny withering 2	19.091
	CRR073320	Tawny withering 3	24.164