Detail information of GWHGAAZE008845


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN74125.12.50207E-59hypothetical protein VITISV_038770 [Vitis vinifera]
Swissprottr|P27788|FER3_MAIZE4E-60Ferredoxin-3, chloroplastic (Precursor)
trEMBLtr|F6HHG1|F6HHG1_VITVI5E-60Putative uncharacterized protein {ECO:0000313|EMBL:CCB51657.1}
TAIR10AT2G27510.12E-39ferredoxin 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene9447223094472526+
GWHAAZE00000002mRNA9447223094472526+
GWHAAZE00000002exon9447223094472526+
GWHAAZE00000002CDS9447223094472526+
Transcript Sequence

Network for GWHGAAZE008845

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00111.28Fer211844.80E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02639petF Photosynthesis map00195

Gene Ontology

GO term OntologyName
GO:0022900biological_processelectron transport chain
GO:0009055molecular_functionelectron transfer activity
GO:0051537molecular_function2 iron, 2 sulfur cluster binding
GO:0051536molecular_functioniron-sulfur cluster binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf132.120
SRR3591706second leaf14.269
SRR3591707mature leaf7.159
SRR3591708Shoot apex63.329
SRR3591709Stem44.618
SRR3591710White floral bud2291.352
SRR3591711White flower2922.126
SRR3591712Green floral bud486.316
SRR3591713Yellow flower3764.766
SRP173429 SRR8316895Juvenile bud stage 33.374
SRR8316896Juvenile bud stage 48.493
SRR8316897Juvenile bud stage 48.039
SRR8316894Third green stage 27.784
SRR8316900Third green stage 207.138
SRR8316901Third green stage 190.978
SRR8316898Complete white stage 785.875
SRR8316899Complete white stage 345.397
SRR8316903Complete white stage 1010.582
SRR8316902Silver flowering stage1312.056
SRR8316904Silver flowering stage1333.819
SRR8316905Silver flowering stage992.664
SRR8316906Gold flowering stage 2859.007
SRR8316907Gold flowering stage 2767.249
SRR8316908Gold flowering stage 2803.849
SRP132670SRR6706286Control225.521
SRR6706287Light intensity 50%289.139
SRR6706288Light intensity 20%260.689
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1154.377
CNS0095593Slightly white alabastrum(diploid) 2109.041
CNS0095594Slightly white alabastrum(diploid) 395.016
CNS0095595Whole white alabastrum(diploid) 2191.438
CNS0095596Whole white alabastrum(diploid) 3271.964
CNS0095597Whole white alabastrum(diploid) 4178.594
CNS0095598Silvery flower (diploied) 11079.856
CNS0095599Silvery flower (diploied) 21302.211
CNS0095600Silvery flower (diploied) 32560.529
CNS0095601Golden flower (diploid) 12006.207
CNS0095602Golden flower (diploid) 22372.817
CNS0095603Golden flower (diploid) 32427.314
CNS0095604Slightly white alabastrum(tetraploid) 1127.886
CNS0095605Slightly white alabastrum(tetraploid) 2108.321
CNS0095606Slightly white alabastrum(tetraploid) 3119.770
CNS0095607Whole white alabastrum(tetraploid) 185.585
CNS0095608Whole white alabastrum(tetraploid) 2147.078
CNS0095609Whole white alabastrum(tetraploid) 3204.733
CNS0095610Silvery flower (tetraploid) 11884.916
CNS0095611Silvery flower (tetraploid) 22649.130
CNS0095612Silvery flower (tetraploid) 33325.138
CNS0095613Golden flower (tetraploid) 14514.520
CNS0095614Golden flower (tetraploid) 23358.477
CNS0095615Golden flower (tetraploid) 34488.492
CRA001975CRR073297Stem 151.354
CRR073298Stem 253.144
CRR073299Stem 366.101
CRR073300Leaf 1141.366
CRR073301Leaf 2127.625
CRR073302Leaf 3222.596
CRR073303Juvenile bud 1279.106
CRR073304Juvenile bud 2901.862
CRR073305Juvenile bud 3250.965
CRR073306Third green 13614.302
CRR073307Third green 22770.182
CRR073308Third green 32500.972
CRR073309Second white 15192.398
CRR073310Second white 23130.465
CRR073311Second white 32586.651
CRR073312Silver flowering 13127.406
CRR073313Silver flowering 23782.641
CRR073314Silver flowering 32777.261
CRR073315Gold flowering 19.790
CRR073316Gold flowering 24.467
CRR073317Gold flowering 32.999
CRR073318Tawny withering 135.193
CRR073319Tawny withering 228.781
CRR073320Tawny withering 321.620