Gene detail

Detail information of GWHGAAZE008819

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011080473.1	PREDICTED: protein argonaute 4 [Sesamum indicum]
Swissprot	tr\|Q9ZVD5\|AGO4_ARATH	Protein argonaute 4
trEMBL	tr\|D7T1K2\|D7T1K2_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI24382.3}
TAIR10	AT2G27040.2	Argonaute family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	93502388	93511816	+
GWHAAZE00000002	mRNA	93502388	93511816	+
GWHAAZE00000002	exon	93502388	93502636	+
GWHAAZE00000002	exon	93502748	93502953	+
GWHAAZE00000002	exon	93503577	93503801	+
GWHAAZE00000002	exon	93503882	93504018	+
GWHAAZE00000002	exon	93504481	93504578	+
GWHAAZE00000002	exon	93504670	93504767	+
GWHAAZE00000002	exon	93504867	93505038	+
GWHAAZE00000002	exon	93505141	93505257	+
GWHAAZE00000002	exon	93505334	93505441	+
GWHAAZE00000002	exon	93506064	93506126	+
GWHAAZE00000002	exon	93506248	93506361	+
GWHAAZE00000002	exon	93506853	93507018	+
GWHAAZE00000002	exon	93507107	93507222	+
GWHAAZE00000002	exon	93507950	93508080	+
GWHAAZE00000002	exon	93509142	93509207	+
GWHAAZE00000002	exon	93509331	93509394	+
GWHAAZE00000002	exon	93509516	93509627	+
GWHAAZE00000002	exon	93509709	93509782	+
GWHAAZE00000002	exon	93510498	93510592	+
GWHAAZE00000002	exon	93510694	93510725	+
GWHAAZE00000002	exon	93511641	93511816	+
GWHAAZE00000002	CDS	93502388	93502636	+
GWHAAZE00000002	CDS	93502748	93502953	+
GWHAAZE00000002	CDS	93503577	93503801	+
GWHAAZE00000002	CDS	93503882	93504018	+
GWHAAZE00000002	CDS	93504481	93504578	+
GWHAAZE00000002	CDS	93504670	93504767	+
GWHAAZE00000002	CDS	93504867	93505038	+
GWHAAZE00000002	CDS	93505141	93505257	+
GWHAAZE00000002	CDS	93505334	93505441	+
GWHAAZE00000002	CDS	93506064	93506126	+
GWHAAZE00000002	CDS	93506248	93506361	+
GWHAAZE00000002	CDS	93506853	93507018	+
GWHAAZE00000002	CDS	93507107	93507222	+
GWHAAZE00000002	CDS	93507950	93508080	+
GWHAAZE00000002	CDS	93509142	93509207	+
GWHAAZE00000002	CDS	93509331	93509394	+
GWHAAZE00000002	CDS	93509516	93509627	+
GWHAAZE00000002	CDS	93509709	93509782	+
GWHAAZE00000002	CDS	93510498	93510592	+
GWHAAZE00000002	CDS	93510694	93510725	+
GWHAAZE00000002	CDS	93511641	93511816	+

Transcript Sequence
>GWHTAAZE008829 ATGGATTCACTTGAACATGATGGTAATGGGGCAGCAGAGGCTTTGCCACCTCCCCCGCCCGTTCCTGAAAATGTAGTTCCAATTAAAGTAGACGCAGAGCTTGCTCCTCCTGAACCCGCTAAGAAAAAGATTGTGCGAGTCCCATTAGCTAGACGTGGCCTTGCATCCAAGGGACAAAAGATCCCTCTCCTAACTAATCACTTCAAAGTGAATGTGACCAATGTTGATGGCCACTTCTTCCACTACAGTATTGCCCTTTTCTATGAAGATGGCCGCCCAGTTGATGGCAAGGGAATTGGAAGAAAGGTGCTTGATAGAGTCCACGAGACTTATGACACAGAGTTAGGTGGAAAAGACTTTGCCTATGATGGGGAGAAGAGTTTGTTTACTATTGGCGCTCTTCCACGAAATAAGCTTGAGTTTACTGTTGTGCTTGAGGAAGTTGGATCAAGCAGAAATAATGGAAATTCGAGCCCTGGTGGACATGGAAGTCCTAATGAGAGTGACCGCAAGAGGATACGTCGTCCATTCCAATCGAAAACATTCAAAGTGGAGATTAGCTTTGCTGCAAAAATTCCTATGCAGGCGATTGCACAGGCATTACGAGGTCAAGAATCAGAAAATAGTCAAGAAGCCTTAAGAGTTTTGGATATCATTTTGAGACAGCATGCAGCAAAACAGGGTTGCCTACTTGTGCGCCAGTCTTTCTTTCACAATGATCCGAGGAACTTTGCTGATGTGGGTGGTGGTGTTCTTGGTTGTAGAGGATTTCATTCAAGTTTCAGAACCACTCAGGGTGGTTTATCATTGAACATTGATGTATCTACCACCATGATTATCCAGCCTGGACCAGTTGTGGATTTTCTTATATCCAACCAAAATGTGAAGGATCCCTTTTCAATTGACTGGGCAAAGGCCAAGAGAACCCTAAAGAATTTGAGGATAAAAGCAAGCCCCACCAACCAGGAGTACAAGATAACTGGATTGAGTGAGCTTCCTTGCAAGGAGCAAACGTTTTCACTGAAACAGAGAAGTGCCAAGGACGAGAATGGCGATGCTCAAATGATGGAGATTACTGTTTTAGATTATTTTGTAAATCACCGTCACATGGAGCTACGTTACTCTGCTGATCTACCCTGCATTAATGTTGGGAAGCCTAAGCGCCCTACTTACATTCCTCTTGAGCTATGCTCCTTGGTGTCGTTACAACGTTATACGAAAGCGCTAAACACTCTTCAAAGATCTTCACTTGTGGAGAAATCAAGGCAAAAGCCTCAAGAGAGGATGAAGGTCTTAACGGATGCTCTGAAAATTAACAATTACGATGCTGAGCCTTTGCTGCGTTCTTGTGGAATTTCTATTAGTAATAACTTCACTCAGGTTGAAGGCCGTGTTTTGCCAGCGCCGAAGTTGAAAGTGGGAAATGGAGAAGACCTCATGCCAAGGAATGGACGCTGGAATCTTAATCACAAGAAATTTGCTGAGCCAACAAAGATAGAACGCTGGGCAGTAGTGAACTTTTCAGCTCGCTGCGATGCTCGTGGACTTGTCAAAGATTTGATCAGATGCGCTGACTCGAAAGGAGTTCAAATTGATGCACCCTTTGATGTTTTTGAAGAAAACCCTCAGTCCAGACGGGCCCCGCCTATGGTTAGGGTTGAGAAAATGTTTGAACAAATACAATCGAAACTTCCTGGGGCTCCCCAATTCCTTCTCTGTCTACTTCCTGAGAGGAAGAACTGCGAAGTTTATGGTCCGTGGAAACGGAAGAATCTTGCTGATCATGGAATAGTGACACAATGCATGCATCCTACCCCAAGAATCAATGATATGTATTATGGAAACCTTCTCCTTAAGATCAATGCTAAGGTTGTCAGTTCGAGGCAATGGCCATTGATTTCCCGCTACAGGGCATCGGTTCGAACTCAGTCCCCAAAGGTGGAAATGATAGATTCGCTCTACAAGCGTACTTCGGACACCGAAGATGATGGCATCATGAGGGAGCTTTTGTTGGATTTCTATTTGAGTTCAGGGAAAAGAAAGCCCGACCAGATCATCATTTTCAGGGATGGTGTAAGTGAGTCGCAGTTCAATCAAGTTCTTAACATCGAGCTGGATCAAATTATTGAGGCATGCAAGTTCCTCGATGAGAACTGGTGTCCAAAGTTTGTTGTGATTGTTGCACAGAAAAATCACCACACCAAATTCTTCCAGCCCAATTCTCCTGACAATGTTCCACCAGGGACGGTGATTGACAACAAAATTTGTCATCCACGGAACTATGATTTTTACATGTGTGCTCACGCAGGAATGATTGGAACCACAAGGCCAACACATTACCATGTGCTGTTAGATGAGGTTGGTTTCTCTGCAGATGAACTCCAGGAGTTTGTTCATTCTCTTTCATACGTGTACCAGAGAAGTACCACTGCAATTTCTGTAGTTGCACCCATTTGCTATGCGCACTTGGCAGCCACTCAAGTGGGGACGTTTATGAAGTTTGAGGACATGTCGGAGTCTTCTTCAAGCCATGGTGGGGTCACAGCACCTGGGGCTATACCTGTCCCCCAGCTGCCCAGATTGAAGGAAAATGTGCGCAACTCCATGTTCTTCGTATAA

Network for GWHGAAZE008819

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16486.6	ArgoN	59	220	4.60E-28
PF08699.11	ArgoL1	232	280	2.20E-16
PF02170.23	PAZ	286	417	3.30E-25
PF16488.6	ArgoL2	427	472	1.20E-15
PF16487.6	ArgoMid	480	533	4.30E-08
PF02171.18	Piwi	625	833	3.50E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11593	ELF2C, AGO	Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	164.149
	SRR3591706	second leaf	75.813
	SRR3591707	mature leaf	62.524
	SRR3591708	Shoot apex	200.848
	SRR3591709	Stem	98.020
	SRR3591710	White floral bud	87.595
	SRR3591711	White flower	93.290
	SRR3591712	Green floral bud	104.581
	SRR3591713	Yellow flower	55.290
SRP173429	SRR8316895	Juvenile bud stage	86.081
	SRR8316896	Juvenile bud stage	102.620
	SRR8316897	Juvenile bud stage	50.585
	SRR8316894	Third green stage	39.940
	SRR8316900	Third green stage	81.747
	SRR8316901	Third green stage	70.861
	SRR8316898	Complete white stage	15.011
	SRR8316899	Complete white stage	93.534
	SRR8316903	Complete white stage	44.441
	SRR8316902	Silver flowering stage	11.995
	SRR8316904	Silver flowering stage	18.872
	SRR8316905	Silver flowering stage	9.465
	SRR8316906	Gold flowering stage	30.234
	SRR8316907	Gold flowering stage	26.747
	SRR8316908	Gold flowering stage	26.550
SRP132670	SRR6706286	Control	82.093
	SRR6706287	Light intensity 50%	83.447
	SRR6706288	Light intensity 20%	91.826
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	44.840
	CNS0095593	Slightly white alabastrum(diploid) 2	38.325
	CNS0095594	Slightly white alabastrum(diploid) 3	40.886
	CNS0095595	Whole white alabastrum(diploid) 2	35.779
	CNS0095596	Whole white alabastrum(diploid) 3	22.671
	CNS0095597	Whole white alabastrum(diploid) 4	32.328
	CNS0095598	Silvery flower (diploied) 1	93.616
	CNS0095599	Silvery flower (diploied) 2	75.155
	CNS0095600	Silvery flower (diploied) 3	82.163
	CNS0095601	Golden flower (diploid) 1	88.635
	CNS0095602	Golden flower (diploid) 2	121.194
	CNS0095603	Golden flower (diploid) 3	116.655
	CNS0095604	Slightly white alabastrum(tetraploid) 1	60.710
	CNS0095605	Slightly white alabastrum(tetraploid) 2	45.836
	CNS0095606	Slightly white alabastrum(tetraploid) 3	167.675
	CNS0095607	Whole white alabastrum(tetraploid) 1	35.866
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.653
	CNS0095609	Whole white alabastrum(tetraploid) 3	79.549
	CNS0095610	Silvery flower (tetraploid) 1	63.740
	CNS0095611	Silvery flower (tetraploid) 2	90.794
	CNS0095612	Silvery flower (tetraploid) 3	46.958
	CNS0095613	Golden flower (tetraploid) 1	27.007
	CNS0095614	Golden flower (tetraploid) 2	61.871
	CNS0095615	Golden flower (tetraploid) 3	39.213
CRA001975	CRR073297	Stem 1	194.546
	CRR073298	Stem 2	181.131
	CRR073299	Stem 3	184.153
	CRR073300	Leaf 1	145.861
	CRR073301	Leaf 2	128.230
	CRR073302	Leaf 3	116.124
	CRR073303	Juvenile bud 1	107.573
	CRR073304	Juvenile bud 2	59.160
	CRR073305	Juvenile bud 3	145.755
	CRR073306	Third green 1	8.466
	CRR073307	Third green 2	8.370
	CRR073308	Third green 3	13.072
	CRR073309	Second white 1	18.011
	CRR073310	Second white 2	13.557
	CRR073311	Second white 3	12.055
	CRR073312	Silver flowering 1	10.996
	CRR073313	Silver flowering 2	15.514
	CRR073314	Silver flowering 3	10.948
	CRR073315	Gold flowering 1	67.905
	CRR073316	Gold flowering 2	119.424
	CRR073317	Gold flowering 3	100.978
	CRR073318	Tawny withering 1	124.388
	CRR073319	Tawny withering 2	90.535
	CRR073320	Tawny withering 3	132.763