Detail information of GWHGAAZE008726


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007204266.10hypothetical protein PRUPE_ppa001783mg [Prunus persica]
Swissprottr|Q42699|METE_CATRO05-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
trEMBLtr|M5WFB9|M5WFB9_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ05465.1}
TAIR10AT5G17920.20Cobalamin-independent synthase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene8930032989306673-
GWHAAZE00000002mRNA8930032989306673-
GWHAAZE00000002exon8930032989300465-
GWHAAZE00000002exon8930055889300696-
GWHAAZE00000002exon8930154689301747-
GWHAAZE00000002exon8930233989302589-
GWHAAZE00000002exon8930297489303079-
GWHAAZE00000002exon8930317889303344-
GWHAAZE00000002exon8930345089303530-
GWHAAZE00000002exon8930374289303905-
GWHAAZE00000002exon8930451889304909-
GWHAAZE00000002exon8930500989305136-
GWHAAZE00000002exon8930611689306203-
GWHAAZE00000002exon8930632489306673-
GWHAAZE00000002CDS8930632489306673-
GWHAAZE00000002CDS8930611689306203-
GWHAAZE00000002CDS8930500989305136-
GWHAAZE00000002CDS8930451889304909-
GWHAAZE00000002CDS8930374289303905-
GWHAAZE00000002CDS8930345089303530-
GWHAAZE00000002CDS8930317889303344-
GWHAAZE00000002CDS8930297489303079-
GWHAAZE00000002CDS8930233989302589-
GWHAAZE00000002CDS8930154689301747-
GWHAAZE00000002CDS8930055889300696-
GWHAAZE00000002CDS8930032989300465-
Transcript Sequence

Network for GWHGAAZE008726

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08267.13Meth_synt_133151.00E-119
PF01717.19Meth_synt_24326892.50E-124
PF01717.19Meth_synt_26917241.70E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00549metE Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Cysteine and methionine metabolismmap00270
Selenocompound metabolismmap00450

Gene Ontology

GO term OntologyName
GO:0009086biological_processmethionine biosynthetic process
GO:0008652biological_processcellular amino acid biosynthetic process
GO:0003871molecular_function5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf514.010
SRR3591706second leaf53.824
SRR3591707mature leaf31.723
SRR3591708Shoot apex115.441
SRR3591709Stem744.067
SRR3591710White floral bud89.259
SRR3591711White flower61.803
SRR3591712Green floral bud197.391
SRR3591713Yellow flower41.651
SRP173429 SRR8316895Juvenile bud stage 64.371
SRR8316896Juvenile bud stage 85.221
SRR8316897Juvenile bud stage 29.789
SRR8316894Third green stage 39.267
SRR8316900Third green stage 203.224
SRR8316901Third green stage 171.789
SRR8316898Complete white stage 56.788
SRR8316899Complete white stage 83.348
SRR8316903Complete white stage 83.018
SRR8316902Silver flowering stage55.305
SRR8316904Silver flowering stage68.503
SRR8316905Silver flowering stage30.042
SRR8316906Gold flowering stage 93.776
SRR8316907Gold flowering stage 129.680
SRR8316908Gold flowering stage 99.002
SRP132670SRR6706286Control141.569
SRR6706287Light intensity 50%146.464
SRR6706288Light intensity 20%152.144
CNP0000432CNS0095592Slightly white alabastrum(diploid) 154.028
CNS0095593Slightly white alabastrum(diploid) 254.541
CNS0095594Slightly white alabastrum(diploid) 351.374
CNS0095595Whole white alabastrum(diploid) 281.282
CNS0095596Whole white alabastrum(diploid) 3101.691
CNS0095597Whole white alabastrum(diploid) 478.067
CNS0095598Silvery flower (diploied) 138.591
CNS0095599Silvery flower (diploied) 243.536
CNS0095600Silvery flower (diploied) 3106.266
CNS0095601Golden flower (diploid) 135.737
CNS0095602Golden flower (diploid) 276.363
CNS0095603Golden flower (diploid) 374.706
CNS0095604Slightly white alabastrum(tetraploid) 199.934
CNS0095605Slightly white alabastrum(tetraploid) 273.528
CNS0095606Slightly white alabastrum(tetraploid) 3103.236
CNS0095607Whole white alabastrum(tetraploid) 1124.066
CNS0095608Whole white alabastrum(tetraploid) 2192.912
CNS0095609Whole white alabastrum(tetraploid) 3247.300
CNS0095610Silvery flower (tetraploid) 1167.871
CNS0095611Silvery flower (tetraploid) 2145.026
CNS0095612Silvery flower (tetraploid) 380.339
CNS0095613Golden flower (tetraploid) 140.307
CNS0095614Golden flower (tetraploid) 2107.721
CNS0095615Golden flower (tetraploid) 334.345
CRA001975CRR073297Stem 184.952
CRR073298Stem 277.906
CRR073299Stem 394.392
CRR073300Leaf 1117.012
CRR073301Leaf 2120.009
CRR073302Leaf 3105.039
CRR073303Juvenile bud 1176.101
CRR073304Juvenile bud 2164.096
CRR073305Juvenile bud 3161.068
CRR073306Third green 1122.312
CRR073307Third green 267.906
CRR073308Third green 383.524
CRR073309Second white 185.886
CRR073310Second white 252.956
CRR073311Second white 360.276
CRR073312Silver flowering 169.717
CRR073313Silver flowering 281.899
CRR073314Silver flowering 365.510
CRR073315Gold flowering 137.744
CRR073316Gold flowering 238.613
CRR073317Gold flowering 337.109
CRR073318Tawny withering 1236.626
CRR073319Tawny withering 2145.132
CRR073320Tawny withering 3322.331