Gene detail

Detail information of GWHGAAZE008697

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15624.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|A5JTQ3\|XYL2_MEDSV	6E-36	Alpha-L-arabinofuranosidase (Precursor)
trEMBL	tr\|A0A068V529\|A0A068V529_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_101 {ECO:0000313\|EMBL:CDP15624.1}
TAIR10	AT5G20950.2	0	Glycosyl hydrolase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	88089657	88096998	+
GWHAAZE00000002	mRNA	88089657	88096998	+
GWHAAZE00000002	exon	88089657	88089882	+
GWHAAZE00000002	exon	88090428	88090632	+
GWHAAZE00000002	exon	88091267	88091357	+
GWHAAZE00000002	exon	88091439	88091629	+
GWHAAZE00000002	exon	88093696	88093939	+
GWHAAZE00000002	exon	88094048	88094152	+
GWHAAZE00000002	exon	88094729	88094911	+
GWHAAZE00000002	exon	88095034	88095235	+
GWHAAZE00000002	exon	88096511	88096998	+
GWHAAZE00000002	CDS	88089657	88089882	+
GWHAAZE00000002	CDS	88090428	88090632	+
GWHAAZE00000002	CDS	88091267	88091357	+
GWHAAZE00000002	CDS	88091439	88091629	+
GWHAAZE00000002	CDS	88093696	88093939	+
GWHAAZE00000002	CDS	88094048	88094152	+
GWHAAZE00000002	CDS	88094729	88094911	+
GWHAAZE00000002	CDS	88095034	88095235	+
GWHAAZE00000002	CDS	88096511	88096998	+

Transcript Sequence
>GWHTAAZE008707 ATGGGGAAGCTTGAAATAGCAATGAGAGGGGTAGGGCTTGTGTTGTTATGCTTCTGGGTAGCTGTTTCAGAAGCAGAGTACATGAAATACAAAGACCCAAAACAGCCATTAAATACTAGAATCAAAGACCTGATGGGCCGAATGACCCTCGAAGAAAAGGTTGGCCAGATGACTCAGATCGAGCGGAAGCTTAGTTCGCGCGATGTGATGAAGAAGTACTTCATTGGGAGTGTTTTGAGTGGAGGAGGGAGTGTACCAGCTCCAAAAGCATCCGCTGAAACTTGGGTTAATATGGTGAATGATTTTCAAAAGGGTTCTCTTTCTACCCGTCTTGGGATTCCGATGATTTATGGAATTGATGCCATTCATGGCAACAACAATGTCTACAATGCAACGATTTTCCCTCACAACGTCGGGCTTGGAGTGACAAGGGATCCTGATCTTTTGAAGAGGATAGGGGTGGCAACTGCTCTTGAAGTTAGAGCTACAGGAATCCCTTATACTTTTGCTCCATGTATCGCGGTGTGTAGGGACCCGAGATGGGGCCGTTGCTATGAAAGCTATAGCGAAGATCATAAGATTGTTCAAGCACTGACCGAGATCATACCGGGCTTACAGGGAGATATGCCGGCCAACTCTCGAAAAGGAGTTCCCTTTGTTGGTGGAAAGTATGAAATTTTATCTCCTTGTACTTTGTTCTTTTCGCCTGTTTGGACAAAAGTGGCAGCCTGTGCTAAGCACTTTGTGGGTGATGGTGGTACGGTTAATGGCATTGATGAGGACAACACGGTGATTGACTATAAAAAGTTGATGAGCATCCACATGCCTGCATACTTCAACTCCATTAGCAAGGGTGTTGCCACTGTAATGGTGTCCTACTCGAGCGTGAACGGGAAGAAGATGCATGCTAACCGTGATCTTGTCACAGGCTTTCTTAAGGGCAAACTCAAGTTTAGGGGTTTTGTTATATCAGATTGGCAAGGTATTGACAAGATCACTACCCCTCCCCATTCTAACTATTCTTATTCGGTTCAAGCTGGAATTGAAGCAGGGATAGACATGATCATGCTTCCCGAGAATTTCACCGAGTTCATTGATGATCTTATCTTCCAAGTGAAGAACAATATTATCCCTATGAGCAGGATTGACGATGCTGTAAAAAGAATCTTGAGGGTCAAGTTTGTCATGGGTCTCTTTGAGAATCCACTGGCTGACCTTAGCTTTGTCAAACATCTTGGAAGCCCGGAGCATAGGGAATTAGCAAGGGAAGCTGTGAGAAAATCTCTTGTTCTTCTGAAGAATGGTAAGATTGCTAATAAGCCATTGGTTCCTCTTCCCAAGAAAGCGGGGAAAATTCTTGTTGCTGGATCTAATGCCCATAACATGGGTAATCAATGTGGAGGATGGACAATCGAATGGCAAGGTCGTAGTGGCGACATTACAGTTGGTACCACAATCTTAACCGCCATAAAAAACGCCGTCGATCCCTCAACACAAGTTGTCTTCAACGAGAATCCTGATGCCAATTTCGTGAAGTCCAACAAATTCTCTTACGCCATTGTCGTAGTGGGTGAACCCCCCTACTCCGAGATAAATGGCGACAGCACCAACTTAACAATACCCGAACCGGGCCCGACCACCATCACCAATGTATGTGGAGCCATCAAGTGCGTGGTTGTCATAGTCTCGGGCCGACCCCTTGTGGTCGAGCCTTATGTTTCAAAAATCGATGCACTTGTTGCTGCTTGGCTCCCTGGAACAGAAGGCCAAGGTGTAGCCGATTTACTTTTCGGTGACTATGGGTTCACCGGGAAGCTAGCTCGGACTTGGTTCAAGTCGGTGGACCAGTTGCCGATGAATGTAGGTGATGCGCATTATGACCCTCTTTTTCCTTTTGGATTTGGTCTTACTACTAAACCTGTGAAGCAGAACTAA

Network for GWHGAAZE008697

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00933.22	Glyco_hydro_3	49	392	5.80E-71
PF01915.23	Glyco_hydro_3_C	429	637	1.30E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05349	bglX	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Cyanoamino acid metabolism	map00460
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	215.609
	SRR3591706	second leaf	61.217
	SRR3591707	mature leaf	10.738
	SRR3591708	Shoot apex	147.778
	SRR3591709	Stem	37.740
	SRR3591710	White floral bud	22.004
	SRR3591711	White flower	12.097
	SRR3591712	Green floral bud	88.777
	SRR3591713	Yellow flower	3.106
SRP173429	SRR8316895	Juvenile bud stage	46.674
	SRR8316896	Juvenile bud stage	46.198
	SRR8316897	Juvenile bud stage	33.155
	SRR8316894	Third green stage	18.984
	SRR8316900	Third green stage	78.526
	SRR8316901	Third green stage	50.288
	SRR8316898	Complete white stage	22.611
	SRR8316899	Complete white stage	70.437
	SRR8316903	Complete white stage	27.613
	SRR8316902	Silver flowering stage	4.529
	SRR8316904	Silver flowering stage	6.274
	SRR8316905	Silver flowering stage	4.533
	SRR8316906	Gold flowering stage	6.688
	SRR8316907	Gold flowering stage	5.431
	SRR8316908	Gold flowering stage	9.258
SRP132670	SRR6706286	Control	105.352
	SRR6706287	Light intensity 50%	90.351
	SRR6706288	Light intensity 20%	94.579
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	46.121
	CNS0095593	Slightly white alabastrum(diploid) 2	47.716
	CNS0095594	Slightly white alabastrum(diploid) 3	43.218
	CNS0095595	Whole white alabastrum(diploid) 2	35.937
	CNS0095596	Whole white alabastrum(diploid) 3	42.451
	CNS0095597	Whole white alabastrum(diploid) 4	26.462
	CNS0095598	Silvery flower (diploied) 1	28.983
	CNS0095599	Silvery flower (diploied) 2	21.717
	CNS0095600	Silvery flower (diploied) 3	30.477
	CNS0095601	Golden flower (diploid) 1	18.306
	CNS0095602	Golden flower (diploid) 2	21.247
	CNS0095603	Golden flower (diploid) 3	19.288
	CNS0095604	Slightly white alabastrum(tetraploid) 1	87.325
	CNS0095605	Slightly white alabastrum(tetraploid) 2	79.003
	CNS0095606	Slightly white alabastrum(tetraploid) 3	179.749
	CNS0095607	Whole white alabastrum(tetraploid) 1	35.312
	CNS0095608	Whole white alabastrum(tetraploid) 2	32.562
	CNS0095609	Whole white alabastrum(tetraploid) 3	138.226
	CNS0095610	Silvery flower (tetraploid) 1	28.842
	CNS0095611	Silvery flower (tetraploid) 2	42.333
	CNS0095612	Silvery flower (tetraploid) 3	16.841
	CNS0095613	Golden flower (tetraploid) 1	12.003
	CNS0095614	Golden flower (tetraploid) 2	17.137
	CNS0095615	Golden flower (tetraploid) 3	21.504
CRA001975	CRR073297	Stem 1	96.938
	CRR073298	Stem 2	94.107
	CRR073299	Stem 3	95.474
	CRR073300	Leaf 1	93.874
	CRR073301	Leaf 2	107.653
	CRR073302	Leaf 3	131.736
	CRR073303	Juvenile bud 1	92.389
	CRR073304	Juvenile bud 2	70.336
	CRR073305	Juvenile bud 3	135.701
	CRR073306	Third green 1	4.778
	CRR073307	Third green 2	5.016
	CRR073308	Third green 3	6.426
	CRR073309	Second white 1	1.849
	CRR073310	Second white 2	0.615
	CRR073311	Second white 3	0.832
	CRR073312	Silver flowering 1	0.716
	CRR073313	Silver flowering 2	1.830
	CRR073314	Silver flowering 3	0.766
	CRR073315	Gold flowering 1	5.618
	CRR073316	Gold flowering 2	9.296
	CRR073317	Gold flowering 3	8.315
	CRR073318	Tawny withering 1	64.987
	CRR073319	Tawny withering 2	39.092
	CRR073320	Tawny withering 3	83.927