Gene detail

Detail information of GWHGAAZE008670

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ABK95236.1	2.5702E-125	unknown [Populus trichocarpa]
Swissprot	tr\|Q56YN8\|SMC3_ARATH	1E-109	Structural maintenance of chromosomes protein 3
trEMBL	tr\|A9PFT3\|A9PFT3_POPTR	1E-125	Putative uncharacterized protein {ECO:0000313\|EMBL:ABK95236.1}
TAIR10	AT2G27170.2	9E-91	Structural maintenance of chromosomes (SMC) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	87347883	87350584	+
GWHAAZE00000002	mRNA	87347883	87350584	+
GWHAAZE00000002	exon	87347883	87348017	+
GWHAAZE00000002	exon	87348360	87348488	+
GWHAAZE00000002	exon	87348931	87349014	+
GWHAAZE00000002	exon	87349158	87349332	+
GWHAAZE00000002	exon	87350394	87350584	+
GWHAAZE00000002	CDS	87347883	87348017	+
GWHAAZE00000002	CDS	87348360	87348488	+
GWHAAZE00000002	CDS	87348931	87349014	+
GWHAAZE00000002	CDS	87349158	87349332	+
GWHAAZE00000002	CDS	87350394	87350584	+

Transcript Sequence
>GWHTAAZE008680 ATGCTTCACAATTGCAATGAGCAACTGGAACAATTCAGCCATGTAAACAAAAAAGCACTCAATCAGTATGCAAATTTTGCAGAACAGCGAGAAGAATTCCAGAAAAGGAAGGAGGAATTAATCGCTGGTGATGAGAAAATCAAAGAACTTATATCTGTGCTGGATCAACAGAAAGATGAATCAATAGAGCGTACCTTCAAAGGTGTTGCCAAGCATTTTCGAGAAGCTTTTTCGGAACTTGTCCAAGGCGGTCATGGAACGTTAGATGGTGATCAAGATTCTGATGACAACGACCAGTCTCTTGCACCTCGTGTGGAAGGAAGGGTTGAGAAATACGTTGGAGTGAAAGTCTCTTTTACTGGGCAAGGGGAAACACAGTCAATGAAGCAGCTGTCCGGAGGTCAGAAAACTGTGGTTGCACTAGCACTCATCTTCGCCATACAGAGATGTGATCCTGCTCCATTTTATCTGTTTGATGAGATAGATGCTGCACTCGATCCTCAGTATAGAACCGCTGTTGCAAATATGATTGAGCGTTTGGCAAACACGACCGGTTCGCAGTTTATAGCAACAACATTCCGGCAAGAGCTTGTAAATGTTGCTGACATGATATACGGGGTTACTCATGCAAACCGGGTTAGCCGCGTCAGCCTTGTCACCAAGGCACAAGCAGTAAATTTTGTTGAGAATGACCACTCCCACAATGTTGAATGA

Network for GWHGAAZE008670

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02463.20	SMC_N	65	212	5.00E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06669	SMC3, CSPG6	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.347
	SRR3591706	second leaf	0.673
	SRR3591707	mature leaf	0.149
	SRR3591708	Shoot apex	1.522
	SRR3591709	Stem	2.369
	SRR3591710	White floral bud	0.174
	SRR3591711	White flower	0.052
	SRR3591712	Green floral bud	3.505
	SRR3591713	Yellow flower	0.112
SRP173429	SRR8316895	Juvenile bud stage	0.961
	SRR8316896	Juvenile bud stage	1.817
	SRR8316897	Juvenile bud stage	2.928
	SRR8316894	Third green stage	1.366
	SRR8316900	Third green stage	1.075
	SRR8316901	Third green stage	2.808
	SRR8316898	Complete white stage	0.511
	SRR8316899	Complete white stage	3.653
	SRR8316903	Complete white stage	1.769
	SRR8316902	Silver flowering stage	0.821
	SRR8316904	Silver flowering stage	0.475
	SRR8316905	Silver flowering stage	0.386
	SRR8316906	Gold flowering stage	0.687
	SRR8316907	Gold flowering stage	1.112
	SRR8316908	Gold flowering stage	1.212
SRP132670	SRR6706286	Control	1.383
	SRR6706287	Light intensity 50%	1.153
	SRR6706288	Light intensity 20%	1.673
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.248
	CNS0095593	Slightly white alabastrum(diploid) 2	2.197
	CNS0095594	Slightly white alabastrum(diploid) 3	2.750
	CNS0095595	Whole white alabastrum(diploid) 2	1.754
	CNS0095596	Whole white alabastrum(diploid) 3	1.312
	CNS0095597	Whole white alabastrum(diploid) 4	2.395
	CNS0095598	Silvery flower (diploied) 1	0.809
	CNS0095599	Silvery flower (diploied) 2	3.152
	CNS0095600	Silvery flower (diploied) 3	0.777
	CNS0095601	Golden flower (diploid) 1	4.118
	CNS0095602	Golden flower (diploid) 2	0.862
	CNS0095603	Golden flower (diploid) 3	1.528
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.883
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.479
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.160
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.107
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.721
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.548
	CNS0095610	Silvery flower (tetraploid) 1	6.558
	CNS0095611	Silvery flower (tetraploid) 2	6.855
	CNS0095612	Silvery flower (tetraploid) 3	7.516
	CNS0095613	Golden flower (tetraploid) 1	4.679
	CNS0095614	Golden flower (tetraploid) 2	4.549
	CNS0095615	Golden flower (tetraploid) 3	2.791
CRA001975	CRR073297	Stem 1	2.232
	CRR073298	Stem 2	3.439
	CRR073299	Stem 3	1.696
	CRR073300	Leaf 1	2.884
	CRR073301	Leaf 2	4.308
	CRR073302	Leaf 3	1.501
	CRR073303	Juvenile bud 1	1.672
	CRR073304	Juvenile bud 2	0.634
	CRR073305	Juvenile bud 3	1.287
	CRR073306	Third green 1	0.619
	CRR073307	Third green 2	0.152
	CRR073308	Third green 3	0.189
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.602
	CRR073311	Second white 3	0.437
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.396
	CRR073315	Gold flowering 1	0.578
	CRR073316	Gold flowering 2	1.606
	CRR073317	Gold flowering 3	0.063
	CRR073318	Tawny withering 1	0.621
	CRR073319	Tawny withering 2	1.238
	CRR073320	Tawny withering 3	1.176