Gene detail

Detail information of GWHGAAZE008658

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI24012.3	4.3277E-107	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q56YN8\|SMC3_ARATH	3E-89	Structural maintenance of chromosomes protein 3
trEMBL	tr\|F6H9I4\|F6H9I4_VITVI	2E-107	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48877.1}
TAIR10	AT2G27170.2	6E-79	Structural maintenance of chromosomes (SMC) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	86842619	86847769	+
GWHAAZE00000002	mRNA	86842619	86847769	+
GWHAAZE00000002	exon	86842619	86842791	+
GWHAAZE00000002	exon	86842931	86843030	+
GWHAAZE00000002	exon	86844344	86844492	+
GWHAAZE00000002	exon	86844956	86845157	+
GWHAAZE00000002	exon	86847415	86847502	+
GWHAAZE00000002	exon	86847588	86847769	+
GWHAAZE00000002	CDS	86842619	86842791	+
GWHAAZE00000002	CDS	86842931	86843030	+
GWHAAZE00000002	CDS	86844344	86844492	+
GWHAAZE00000002	CDS	86844956	86845157	+
GWHAAZE00000002	CDS	86847415	86847502	+
GWHAAZE00000002	CDS	86847588	86847769	+

Transcript Sequence
>GWHTAAZE008668 GAGAAAAAACTCAATGATGAAATTGATCAGCTTAAAACCGAGCTGGATAAGGCGGAAACACACGTTAAGGGTTTTGAAACTGAAATAGCAGCATTACAATCTGTTATATCTCAGAATCATGACAGTTACAATCAGTACAGGTCACAGAGGGACAAGCTGAACGATGAGCGGAAGTATTTGTGGTGGAAAGAAAATGATCTAGCTAATGAAATTGATCGACTTAAAATAGAAGTTACAAAGGCGGAGAAAAACCTACAGTTCTTGATTCCTAGTGATATTTGGAGAGGGATGAGTTCTGTTAAAAGGATACACAAGCGGAAGTCAATGGGAAAAAGAATTAAAGAAGAATGTTTCTCGATTTTTGACTTGCTCGACTGTGAGGAAAAGTATTTCACTGCTGTTGAAATTGCTGCAGGAAACAGCTTATTTCATTTGGTGGTTGAAAATGATGGAACATCAACACATATGATTGAAAACCTTTGTAAAGAAAACGGTGGAAGAGTTACGTTTATTCCATTAAATACAGTGCAGGCCCAACAAGTTCCTTATCCAGAAAGTTCTGATGTGATACCTGTTCTAAAGAAATTGAGATTCCCTCACAATTATTCTCCGGCTTTTGAGGAGGTGTTTGCTAGAACTGTAATTTGCCGAAATCTGGATGTGGCTAGGGATGTTGCACGCACTTGGGACCTAGACTGCATAACGTTGGAAGGTGACAAAGTGAGCCAGAATGGTTGTATGACAGGAGGATTTTATGATTATAGGCATTCAAAACTGAAGTTAAGGAACACTATTAAACAGAATACAGAGTCCATTGACGAGAAGAGAATTGAATTGGAGAAAGTTGAATCCAATCTTAAAGATATCCTTTATTTTCTTTTCTCTTTCTCGTAG

Network for GWHGAAZE008658

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06470.14	SMC_hinge	120	225	5.70E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06669	SMC3, CSPG6	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114

Gene Ontology

GO term	Ontology	Name
GO:0051276	biological_process	chromosome organization
GO:0005694	cellular_component	chromosome
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.241
	SRR3591710	White floral bud	0.274
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.519
	SRR3591713	Yellow flower	0.267
SRP173429	SRR8316895	Juvenile bud stage	0.671
	SRR8316896	Juvenile bud stage	0.434
	SRR8316897	Juvenile bud stage	0.074
	SRR8316894	Third green stage	0.151
	SRR8316900	Third green stage	0.498
	SRR8316901	Third green stage	0.265
	SRR8316898	Complete white stage	0.325
	SRR8316899	Complete white stage	0.730
	SRR8316903	Complete white stage	0.378
	SRR8316902	Silver flowering stage	0.082
	SRR8316904	Silver flowering stage	0.212
	SRR8316905	Silver flowering stage	0.156
	SRR8316906	Gold flowering stage	0.582
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.056
SRP132670	SRR6706286	Control	0.588
	SRR6706287	Light intensity 50%	0.669
	SRR6706288	Light intensity 20%	0.715
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.179
	CNS0095593	Slightly white alabastrum(diploid) 2	0.282
	CNS0095594	Slightly white alabastrum(diploid) 3	0.438
	CNS0095595	Whole white alabastrum(diploid) 2	0.196
	CNS0095596	Whole white alabastrum(diploid) 3	0.171
	CNS0095597	Whole white alabastrum(diploid) 4	0.255
	CNS0095598	Silvery flower (diploied) 1	0.086
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.110
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.039
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.112
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.023
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.028
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.797
	CNS0095610	Silvery flower (tetraploid) 1	0.150
	CNS0095611	Silvery flower (tetraploid) 2	0.144
	CNS0095612	Silvery flower (tetraploid) 3	0.013
	CNS0095613	Golden flower (tetraploid) 1	0.099
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.091
	CRR073298	Stem 2	0.170
	CRR073299	Stem 3	0.330
	CRR073300	Leaf 1	0.005
	CRR073301	Leaf 2	0.330
	CRR073302	Leaf 3	0.153
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.315
	CRR073305	Juvenile bud 3	0.100
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.106
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.069
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.040
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.246