Detail information of GWHGAAZE008621


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHM99111.12.35338E-94Structural maintenance of chromosomes protein 3, partial [Glycine soja]
Swissprottr|Q56YN8|SMC3_ARATH6E-80Structural maintenance of chromosomes protein 3
trEMBLtr|M1A5I1|M1A5I1_SOLTU2E-95Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400015132}
TAIR10AT2G27170.26E-57Structural maintenance of chromosomes (SMC) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene8539852785401559+
GWHAAZE00000002mRNA8539852785401559+
GWHAAZE00000002exon8539852785398661+
GWHAAZE00000002exon8539879885398864+
GWHAAZE00000002exon8539998485400157+
GWHAAZE00000002exon8540134885401559+
GWHAAZE00000002CDS8539852785398661+
GWHAAZE00000002CDS8539879885398864+
GWHAAZE00000002CDS8539998485400157+
GWHAAZE00000002CDS8540134885401559+
Transcript Sequence

Network for GWHGAAZE008621

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02463.20SMC_N651646.70E-30
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K06669SMC3, CSPG6 Cell cycle map04110
Cell cycle - yeastmap04111
Meiosis - yeastmap04113
Oocyte meiosismap04114

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.725
SRR3591706second leaf11.904
SRR3591707mature leaf12.795
SRR3591708Shoot apex31.016
SRR3591709Stem23.110
SRR3591710White floral bud15.198
SRR3591711White flower23.845
SRR3591712Green floral bud18.830
SRR3591713Yellow flower17.625
SRP173429 SRR8316895Juvenile bud stage 16.910
SRR8316896Juvenile bud stage 24.675
SRR8316897Juvenile bud stage 8.060
SRR8316894Third green stage 8.404
SRR8316900Third green stage 15.944
SRR8316901Third green stage 16.188
SRR8316898Complete white stage 3.447
SRR8316899Complete white stage 21.514
SRR8316903Complete white stage 14.861
SRR8316902Silver flowering stage7.603
SRR8316904Silver flowering stage10.373
SRR8316905Silver flowering stage4.178
SRR8316906Gold flowering stage 13.537
SRR8316907Gold flowering stage 12.717
SRR8316908Gold flowering stage 18.107
SRP132670SRR6706286Control5.376
SRR6706287Light intensity 50%5.656
SRR6706288Light intensity 20%6.349
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.602
CNS0095593Slightly white alabastrum(diploid) 217.886
CNS0095594Slightly white alabastrum(diploid) 314.398
CNS0095595Whole white alabastrum(diploid) 215.493
CNS0095596Whole white alabastrum(diploid) 39.382
CNS0095597Whole white alabastrum(diploid) 412.941
CNS0095598Silvery flower (diploied) 122.354
CNS0095599Silvery flower (diploied) 221.410
CNS0095600Silvery flower (diploied) 316.745
CNS0095601Golden flower (diploid) 124.408
CNS0095602Golden flower (diploid) 217.265
CNS0095603Golden flower (diploid) 318.880
CNS0095604Slightly white alabastrum(tetraploid) 114.857
CNS0095605Slightly white alabastrum(tetraploid) 210.280
CNS0095606Slightly white alabastrum(tetraploid) 327.246
CNS0095607Whole white alabastrum(tetraploid) 111.528
CNS0095608Whole white alabastrum(tetraploid) 25.566
CNS0095609Whole white alabastrum(tetraploid) 314.440
CNS0095610Silvery flower (tetraploid) 115.435
CNS0095611Silvery flower (tetraploid) 216.470
CNS0095612Silvery flower (tetraploid) 315.490
CNS0095613Golden flower (tetraploid) 17.557
CNS0095614Golden flower (tetraploid) 215.672
CNS0095615Golden flower (tetraploid) 310.449
CRA001975CRR073297Stem 116.860
CRR073298Stem 219.155
CRR073299Stem 38.502
CRR073300Leaf 118.194
CRR073301Leaf 216.283
CRR073302Leaf 310.263
CRR073303Juvenile bud 110.406
CRR073304Juvenile bud 24.875
CRR073305Juvenile bud 310.740
CRR073306Third green 12.759
CRR073307Third green 23.251
CRR073308Third green 34.740
CRR073309Second white 12.178
CRR073310Second white 24.351
CRR073311Second white 34.519
CRR073312Silver flowering 13.105
CRR073313Silver flowering 20.482
CRR073314Silver flowering 33.367
CRR073315Gold flowering 13.959
CRR073316Gold flowering 214.457
CRR073317Gold flowering 31.992
CRR073318Tawny withering 129.450
CRR073319Tawny withering 226.732
CRR073320Tawny withering 311.395