Gene detail

Detail information of GWHGAAZE008617

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002529661.1	0	Structural maintenance of chromosome, putative [Ricinus communis]
Swissprot	tr\|Q56YN8\|SMC3_ARATH	1E-163	Structural maintenance of chromosomes protein 3
trEMBL	tr\|B9SUJ2\|B9SUJ2_RICCO	0	Structural maintenance of chromosome, putative {ECO:0000313\|EMBL:EEF32748.1}
TAIR10	AT2G27170.2	3E-85	Structural maintenance of chromosomes (SMC) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	85151219	85181866	+
GWHAAZE00000002	mRNA	85151219	85181866	+
GWHAAZE00000002	exon	85151219	85151233	+
GWHAAZE00000002	exon	85151329	85151404	+
GWHAAZE00000002	exon	85153813	85153851	+
GWHAAZE00000002	exon	85153973	85154040	+
GWHAAZE00000002	exon	85154149	85154230	+
GWHAAZE00000002	exon	85155963	85156138	+
GWHAAZE00000002	exon	85158033	85158277	+
GWHAAZE00000002	exon	85158505	85158624	+
GWHAAZE00000002	exon	85164127	85164271	+
GWHAAZE00000002	exon	85166762	85166934	+
GWHAAZE00000002	exon	85167076	85167175	+
GWHAAZE00000002	exon	85168611	85168651	+
GWHAAZE00000002	exon	85169113	85169314	+
GWHAAZE00000002	exon	85170571	85170753	+
GWHAAZE00000002	exon	85175928	85176331	+
GWHAAZE00000002	exon	85177171	85177303	+
GWHAAZE00000002	exon	85177730	85177913	+
GWHAAZE00000002	exon	85178291	85178364	+
GWHAAZE00000002	exon	85178433	85178584	+
GWHAAZE00000002	exon	85179627	85179795	+
GWHAAZE00000002	exon	85180138	85180204	+
GWHAAZE00000002	exon	85181685	85181866	+
GWHAAZE00000002	CDS	85151219	85151233	+
GWHAAZE00000002	CDS	85151329	85151404	+
GWHAAZE00000002	CDS	85153813	85153851	+
GWHAAZE00000002	CDS	85153973	85154040	+
GWHAAZE00000002	CDS	85154149	85154230	+
GWHAAZE00000002	CDS	85155963	85156138	+
GWHAAZE00000002	CDS	85158033	85158277	+
GWHAAZE00000002	CDS	85158505	85158624	+
GWHAAZE00000002	CDS	85164127	85164271	+
GWHAAZE00000002	CDS	85166762	85166934	+
GWHAAZE00000002	CDS	85167076	85167175	+
GWHAAZE00000002	CDS	85168611	85168651	+
GWHAAZE00000002	CDS	85169113	85169314	+
GWHAAZE00000002	CDS	85170571	85170753	+
GWHAAZE00000002	CDS	85175928	85176331	+
GWHAAZE00000002	CDS	85177171	85177303	+
GWHAAZE00000002	CDS	85177730	85177913	+
GWHAAZE00000002	CDS	85178291	85178364	+
GWHAAZE00000002	CDS	85178433	85178584	+
GWHAAZE00000002	CDS	85179627	85179795	+
GWHAAZE00000002	CDS	85180138	85180204	+
GWHAAZE00000002	CDS	85181685	85181866	+

Transcript Sequence
>GWHTAAZE008627 ATGTATATAAAACAGGTTATTATTGAGGGGTTTAAGAGCTACAAAGAACAAGTTGCTACTGAGTCTTTCAGTCCAAAAGTAAATTGCGTTGTTGGTGCTAATGGATCTGGCAAATCGAACTTTTTCCAAGCTATCCGTTTTGTGATAAGTGACCTCTTCCAACAACTGCGCACTGAAGACAGGCATAAACTCCTACATGAAGGTGCAGGACGCCAATTGCTAACTGCTTTTGTGGAGATTGTGTTTGACAACTCTGAACAACGCATCCCTGTAATATTTAGTAAGAAGAGAAACCAGATAATTCAAATTGTTCAGTACTTGGACGAGAGATTAAGAGAGCTGGATGAAGAGAGAGCAGAGCTGAAAAACTTTCAGCAGATTGACAATAAGAGGAAATACTTACAGTACACGATATATGACAAAGAACTTCATGTTGCACAACAGAAACTAGTGGAGGTAGAAGTGGCTCGGAACAATGTTTCCAAAAAATCAACTGAGAGGAATAAAAAATTGTCAGACGCAGTAGAAGAGTTGAACGAGTTGGACAAGTCAGCTAAAGATTTGACAAGAGAAGTTCAAAGTTTAATTAGAGAGAAAGAAGCATTAGAGAAGCAACAGGCCAATGCTATTCAAATGCGTGCTCAGCTTGAGCTTGATGAAAAGACCTTCAAGAAAAGATCACTGGAATTATTAAAGCCAAGGAAGATGCAACAAAACAGCTTGAGCTTCTCCAGAGAAATCGAGGAATCCACAGACGAGCTCAACAAAATCAAGCCATTGTACCACAAGCAAGTCAGAGAGGAAGAGGACATTACACGAGGGATAATGGAGCGTGAAAATCGCCTCAACATTCTTTATCAGAAACAAGGTCGTACAACCGAGTTTTCTAGTAAACCCGCTCGTGACAAGTGGCTTCAAGATGTAATTGACCAGTACGAACGAGCATTGTCTTCAAATCAAATGCAGGAGAAAAAACTCAATGATGAAATTGATCAGCTTAAAACCGAGCTGGATAAGGCGCAAACACACGTTAAGGGTTTTGAAACTGAAATAGCAGCATTACAATCTGTTATATCTCAGAATCGTGACAGTTACAATCAGTACAGGTCACAGAGGGACAAGCTGAACGATGAGCGGAAGTATTTGTGGTGGAAAGAAAATGATCTAGCTAATGAAATTGATCGACTTAAAACAGAAGTTACAAAGGCGGAGAAAGACCTACAGTTCTCGATTCCTAGTGAAAAGTATTTCACTGCTGTTGAAATTGCTGCAGGAAACAGCTTATTTCATTTGGTGGTTGAAAATGATGGAACATCAACACATATGATTGAAAACCTTTGTAAAGAAAACGGTGGAAGAGTTACGTTTATTCCATTAAATACAGTGCAGGCCCAACAAGTTCCTTATCCAGAAAGTTCTGATGTGATACCTGTTCTGAAGAAATTGAGATTCCCTCACAATTATTCTCCGGCTTTTGAGGAGGTATGTACTCAACCGAGCACTAATCTTGTGAATAACCTTTCACATTACTGCCCTGTTCAAACTCATCTTATCGTTCATAGCCCCTCTTCTGTTTCATTCTCGAGTTCGTCCTCTTTCGTTCCTAATTCTGGGGAATATGGGGAGGGTGAAGATCATACTTCAGTTTGTTTGCAAGAAAAGGATGTGTTTGCTAGAACTGTAATTTGCGAAATCTGGATGTGGCTAGGGATGTTGCACGACTTGGGACCTAGACTGCATAACGCGTTGGAAGGTTACTCCAGCATTTTGTACTATTTCTTTTCTGGCTACTTTAGCTTGTACATGGTGCCTTCACAGCTTCATTCTTTTGTTACAGGTGACAAAGTGAGCCAGAATGGTTGTATGACAGGAGGATTTTATGATTATAGGCATTCAAAACTGAAGTTAAGGAACACTATTAAACAGAATACAGAGTCCATTGACGAGAAGAGAATTGAATTGGAGAAAGTTGAATCCAATCTTAAAGATATCCTTTATTTTCTTTTCTCTTTCGTAGATTTAAGTTTAATGCCTCTAGAATCAAAACTTTTACTTTTACGATTTGGGCTTGAACTTGTTGGTGAGCGACAGAAAGCTGATGCCAAGTTGGCGTATGACAAATCAGTGTTGGAACAGCTTAAACGGGATAATGCTAACGCTAAAAATCAGCAGCACTCCATTTCCAAAGTCATTGAGAAGAAGATTGAGACCAGAAAAGCCGAGCTTGAGACCAATCTTTTAACAAACTTGGCAAAAAGGACACAAGAACTGGAGGCAATAAAATCTTCAGAAGAGCCCAAAACGTTACATAGTGAAGCTGACCTAAAAACGCAAGAACTAAGGGTCACTGAGTTACTAGCTGAAGATGTGACACACCATCTCAAAAGAGTTTCTGAAAGCATAGAGGAACAAACCAGTAAGCTTCAAGAGATCAAAGAAAAAAGAAATGAGTTAAAGGTGACCAGTGAAGATAACTATCAAAGGGCAGTCGAAGATAATAACAAAGACCTCGAACAACTATTAACTACAAGAAATATTCTCGTCGCCAAAGAAGAACAGTACTCGAAGAAAATCAGGGAATTGGGTCCATTGTCTTTTGATTCCTTGGACAGGTATAAGAGGAAGAGCGTAAAAGACTTGTATGAAATGCTTCACAATTGCAATGAGCAACTGGAACAATTCAGCCATGTAAATAAAAAAGCACTCAATCAGTATGCAAATTTTGCAGAACAGCGAGAAGAATTCCAGAAAAGGAAGGAGGAATTAATCGCTGGTGATGAGAAAATCAAAGAACTTATATCTGTGCTGGATCAACAGAAAGATGAATCAATAGAGCGTACCTTCAAAGATATGATTGAGCGTTTGGCAAACACGACTGGTTCGCAGTTTATAGCAACAACATTCCGGCTAAATGTTGCTGACAAGATATACGGGGTTACTCACGCAAACCGGGTTAGCCGCGTCAGCCTTGTCACCAAGGCACAAGCACTAAATTTTGTTGAGAATGACCACTCCCACAATGTTGAATGA

Network for GWHGAAZE008617

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02463.20	SMC_N	2	126	2.70E-24
PF06470.14	SMC_hinge	410	507	3.40E-16

Protein Sequence

>GWHPAAZE008622
MYIKQVIIEGFKSYKEQVATESFSPKVNCVVGANGSGKSNFFQAIRFVISDLFQQLRTEDRHKLLHEGAGRQLLTAFVEIVFDNSEQRIPVIFSKKRNQIIQIVQYLDERLRELDEERAELKNFQQIDNKRKYLQYTIYDKELHVAQQKLVEVEVARNNVSKKSTERNKKLSDAVEELNELDKSAKDLTREVQSLIREKEALEKQQANAIQMRAQLELDEKTFKKRSLELLKPRKMQQNSLSFSREIEESTDELNKIKPLYHKQVREEEDITRGIMERENRLNILYQKQGRTTEFSSKPARDKWLQDVIDQYERALSSNQMQEKKLNDEIDQLKTELDKAQTHVKGFETEIAALQSVISQNRDSYNQYRSQRDKLNDERKYLWWKENDLANEIDRLKTEVTKAEKDLQFSIPSEKYFTAVEIAAGNSLFHLVVENDGTSTHMIENLCKENGGRVTFIPLNTVQAQQVPYPESSDVIPVLKKLRFPHNYSPAFEEVCTQPSTNLVNNLSHYCPVQTHLIVHSPSSVSFSSSSSFVPNSGEYGEGEDHTSVCLQEKDVFARTVICEIWMWLGMLHDLGPRLHNALEGYSSILYYFFSGYFSLYMVPSQLHSFVTGDKVSQNGCMTGGFYDYRHSKLKLRNTIKQNTESIDEKRIELEKVESNLKDILYFLFSFVDLSLMPLESKLLLLRFGLELVGERQKADAKLAYDKSVLEQLKRDNANAKNQQHSISKVIEKKIETRKAELETNLLTNLAKRTQELEAIKSSEEPKTLHSEADLKTQELRVTELLAEDVTHHLKRVSESIEEQTSKLQEIKEKRNELKVTSEDNYQRAVEDNNKDLEQLLTTRNILVAKEEQYSKKIRELGPLSFDSLDRYKRKSVKDLYEMLHNCNEQLEQFSHVNKKALNQYANFAEQREEFQKRKEELIAGDEKIKELISVLDQQKDESIERTFKDMIERLANTTGSQFIATTFRLNVADKIYGVTHANRVSRVSLVTKAQALNFVENDHSHNVE

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06669	SMC3, CSPG6	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114

Gene Ontology

GO term	Ontology	Name
GO:0051276	biological_process	chromosome organization
GO:0005694	cellular_component	chromosome
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.217
	SRR3591706	second leaf	0.129
	SRR3591707	mature leaf	0.132
	SRR3591708	Shoot apex	0.230
	SRR3591709	Stem	0.392
	SRR3591710	White floral bud	0.243
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.432
	SRR3591713	Yellow flower	0.015
SRP173429	SRR8316895	Juvenile bud stage	0.243
	SRR8316896	Juvenile bud stage	1.092
	SRR8316897	Juvenile bud stage	0.193
	SRR8316894	Third green stage	0.157
	SRR8316900	Third green stage	0.253
	SRR8316901	Third green stage	0.299
	SRR8316898	Complete white stage	0.139
	SRR8316899	Complete white stage	0.344
	SRR8316903	Complete white stage	0.251
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.088
	SRR8316905	Silver flowering stage	0.022
	SRR8316906	Gold flowering stage	0.049
	SRR8316907	Gold flowering stage	0.048
	SRR8316908	Gold flowering stage	0.070
SRP132670	SRR6706286	Control	0.125
	SRR6706287	Light intensity 50%	0.055
	SRR6706288	Light intensity 20%	0.088
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.310
	CNS0095593	Slightly white alabastrum(diploid) 2	0.180
	CNS0095594	Slightly white alabastrum(diploid) 3	0.348
	CNS0095595	Whole white alabastrum(diploid) 2	0.166
	CNS0095596	Whole white alabastrum(diploid) 3	0.164
	CNS0095597	Whole white alabastrum(diploid) 4	0.179
	CNS0095598	Silvery flower (diploied) 1	0.223
	CNS0095599	Silvery flower (diploied) 2	0.127
	CNS0095600	Silvery flower (diploied) 3	0.052
	CNS0095601	Golden flower (diploid) 1	0.146
	CNS0095602	Golden flower (diploid) 2	0.032
	CNS0095603	Golden flower (diploid) 3	0.079
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.427
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.535
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.661
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.382
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.175
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.464
	CNS0095610	Silvery flower (tetraploid) 1	0.500
	CNS0095611	Silvery flower (tetraploid) 2	0.396
	CNS0095612	Silvery flower (tetraploid) 3	0.206
	CNS0095613	Golden flower (tetraploid) 1	0.082
	CNS0095614	Golden flower (tetraploid) 2	0.265
	CNS0095615	Golden flower (tetraploid) 3	0.130
CRA001975	CRR073297	Stem 1	0.270
	CRR073298	Stem 2	0.111
	CRR073299	Stem 3	0.119
	CRR073300	Leaf 1	0.169
	CRR073301	Leaf 2	0.097
	CRR073302	Leaf 3	0.301
	CRR073303	Juvenile bud 1	0.011
	CRR073304	Juvenile bud 2	0.032
	CRR073305	Juvenile bud 3	0.052
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.010
	CRR073308	Third green 3	0.025
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.014
	CRR073311	Second white 3	0.005
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.014
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.063
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.060
	CRR073319	Tawny withering 2	0.033
	CRR073320	Tawny withering 3	0.140