Gene detail

Detail information of GWHGAAZE008615

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010254292.1	4.9514E-174	PREDICTED: structural maintenance of chromosomes protein 3 [Nelumbo nucifera]
Swissprot	tr\|Q56YN8\|SMC3_ARATH	7E-110	Structural maintenance of chromosomes protein 3
trEMBL	tr\|A0A0A0L0E5\|A0A0A0L0E5_CUCSA	2E-171	Uncharacterized protein {ECO:0000313\|EMBL:KGN54062.1}
TAIR10	AT2G27170.2	4E-91	Structural maintenance of chromosomes (SMC) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	84931499	84941225	+
GWHAAZE00000002	mRNA	84931499	84941225	+
GWHAAZE00000002	exon	84931499	84931525	+
GWHAAZE00000002	exon	84933335	84933422	+
GWHAAZE00000002	exon	84933505	84933635	+
GWHAAZE00000002	exon	84934582	84934731	+
GWHAAZE00000002	exon	84935150	84935333	+
GWHAAZE00000002	exon	84938013	84938055	+
GWHAAZE00000002	exon	84938482	84938692	+
GWHAAZE00000002	exon	84938994	84939140	+
GWHAAZE00000002	exon	84939546	84939629	+
GWHAAZE00000002	exon	84939851	84940025	+
GWHAAZE00000002	exon	84941035	84941225	+
GWHAAZE00000002	CDS	84931499	84931525	+
GWHAAZE00000002	CDS	84933335	84933422	+
GWHAAZE00000002	CDS	84933505	84933635	+
GWHAAZE00000002	CDS	84934582	84934731	+
GWHAAZE00000002	CDS	84935150	84935333	+
GWHAAZE00000002	CDS	84938013	84938055	+
GWHAAZE00000002	CDS	84938482	84938692	+
GWHAAZE00000002	CDS	84938994	84939140	+
GWHAAZE00000002	CDS	84939546	84939629	+
GWHAAZE00000002	CDS	84939851	84940025	+
GWHAAZE00000002	CDS	84941035	84941225	+

Transcript Sequence
>GWHTAAZE008625 ATGATCTTCCTATTGCTTTACGCAAAGGTGTTTGCTAGAACTGTAATTTGCCGAAATCTGGATGTGGCTACGGACGTTGCACGCACTTGGGACCTAGACTGCATAACGTTGGAAGGTGACAAAGTGAGCCAGAATGGTTGTATGACAGGAGGATTTTACGATTATAGGCATTCAAAACTGAAGTTAAGGAACACTATTAAACAGAATACAGAGTCCATTGATGAGAAGAAAATTGAATTGGAGAAAATAGACCAGAAAATTAGTGAACTTGTTGGTGAGCAACAGAAAGCTGATGCCAAGTTGGCGTATGACAAATCAGCGTTGGAACAGCTTAAATGGGATAATGCTAACGCTAAAAATCAGCAGCACTCCATTTCCAAAGTCATTGAGAAGAAGATTGAGACCAGAAAAGCCGAGCTTGAGACCAATCTTTTAACAAACTTGGCAAAAAGGACACAAGAACTGGAGGCAATAAAATCTTCAGAAGAGCCCAAAACGTTACATAGTGAAGCTGAACTAAAAAGGCAAGAACTAAGGGTCACTGAGTTACTAGCTGAAGATGTGACACACCATCTCAAAAGGCGAGCAATGGTCATTGAGTCAAATTTTGGGAGGATTGAAAGGTATAAGAGGAAGAGCGTAAAAGACTTGTATGAAATGCTTCACAATTGCAATGAGCAACTGGAACAATTCAGCCATGTAAACAAAAAAGCAATCAATCAGTATGCAAATTTTGCAGAACAGCGAGAAGAATTCCAGAAAAGGAAGGAGGAATTAATCGCTGGTGATGAGGCACTTTTTTTCAGTCGGATATCTTCTTTTCAGTTACTAAAAAAAATCAAAGAACTTATATCTGTGCTGGATCAACAGAAAGATGAATCAATAGAGCGTACCTTCAAAGGTGTTGCCAAGCATTTTCAAGAAGCTTTTTCGGAACTTGTCCAAGGCGGTCATGGAACGTTAGTAATGACAAAGAAAAAGGATGGTGATCAAGATTCTGATGACAACGACCAGTCTCTTGCACCTCGTGTGGAAGGAAGGGTTGAGAAATACATTGGAGTGAAAGTCTCTTTTACTGGGCAAGGGGAAACACAGTCAATGAAGCAGCTGTCCGGAGGTAAGAAAACTGTGGTTGCACTAGCATTCATCTTCGCCATACAGAGATGTGATCCTGCTCCATTTTATCTGTTTGATGAGATAGATGCTGCACTCGATCCTCAGTATAGAACTGCTGTTGCAAATATGACTGAGCGTTTGGCAAACACGACCAGTTCGCAGTTTATAGCAACAACATTCCGACAAGAGCTTGTAAAAGTTGCTGACAAGATATACGGGGTTACTCACGCAAACCAGGTTAGCCGCGTTGGCCTTGTCACCAAGGCACAAGCACTAAATTTTGTTGAGAATGACCACTTCCACAATGTTGAATGA

Network for GWHGAAZE008615

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02463.20	SMC_N	132	452	1.70E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06669	SMC3, CSPG6	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114

Gene Ontology

GO term	Ontology	Name
GO:0051276	biological_process	chromosome organization
GO:0005694	cellular_component	chromosome
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.141
	SRR3591706	second leaf	0.032
	SRR3591707	mature leaf	0.044
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.139
	SRR3591710	White floral bud	0.064
	SRR3591711	White flower	0.008
	SRR3591712	Green floral bud	0.344
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.040
	SRR8316896	Juvenile bud stage	0.097
	SRR8316897	Juvenile bud stage	0.130
	SRR8316894	Third green stage	0.065
	SRR8316900	Third green stage	0.028
	SRR8316901	Third green stage	0.073
	SRR8316898	Complete white stage	0.017
	SRR8316899	Complete white stage	0.226
	SRR8316903	Complete white stage	0.055
	SRR8316902	Silver flowering stage	0.002
	SRR8316904	Silver flowering stage	0.005
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.114
SRP132670	SRR6706286	Control	0.024
	SRR6706287	Light intensity 50%	0.003
	SRR6706288	Light intensity 20%	0.004
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.148
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.037
	CNS0095595	Whole white alabastrum(diploid) 2	0.035
	CNS0095596	Whole white alabastrum(diploid) 3	0.074
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.029
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.062
	CNS0095602	Golden flower (diploid) 2	0.025
	CNS0095603	Golden flower (diploid) 3	0.046
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.204
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.079
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.172
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.315
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.261
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.165
	CNS0095610	Silvery flower (tetraploid) 1	0.341
	CNS0095611	Silvery flower (tetraploid) 2	0.033
	CNS0095612	Silvery flower (tetraploid) 3	0.068
	CNS0095613	Golden flower (tetraploid) 1	0.100
	CNS0095614	Golden flower (tetraploid) 2	0.033
	CNS0095615	Golden flower (tetraploid) 3	0.002
CRA001975	CRR073297	Stem 1	0.194
	CRR073298	Stem 2	0.035
	CRR073299	Stem 3	0.032
	CRR073300	Leaf 1	0.043
	CRR073301	Leaf 2	0.017
	CRR073302	Leaf 3	0.010
	CRR073303	Juvenile bud 1	0.032
	CRR073304	Juvenile bud 2	0.024
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.003
	CRR073307	Third green 2	0.010
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.014
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.095
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000