Detail information of GWHGAAZE008554


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAGE10578.104-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Lonicera japonica]
Swissprottr|P93841|ISPE_SOLLC04-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic (Precursor; Fragment)
trEMBLtr|W8CIE7|W8CIE7_LONJA04-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000313|EMBL:AGE10578.1}
TAIR10AT2G26930.17E-1394-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene8254866782554921-
GWHAAZE00000002mRNA8254866782554921-
GWHAAZE00000002exon8255448482554921-
GWHAAZE00000002exon8255427782554372-
GWHAAZE00000002exon8255375582553823-
GWHAAZE00000002exon8255337282553476-
GWHAAZE00000002exon8255322882553284-
GWHAAZE00000002exon8255266082552860-
GWHAAZE00000002exon8255100482551096-
GWHAAZE00000002exon8255075882550857-
GWHAAZE00000002exon8255019282550291-
GWHAAZE00000002exon8254955982549644-
GWHAAZE00000002exon8254866782548767-
GWHAAZE00000002five_prime_UTR8255469782554921-
GWHAAZE00000002CDS8255448482554696-
GWHAAZE00000002CDS8255427782554372-
GWHAAZE00000002CDS8255375582553823-
GWHAAZE00000002CDS8255337282553476-
GWHAAZE00000002CDS8255322882553284-
GWHAAZE00000002CDS8255266082552860-
GWHAAZE00000002CDS8255100482551096-
GWHAAZE00000002CDS8255075882550857-
GWHAAZE00000002CDS8255019282550291-
GWHAAZE00000002CDS8254955982549644-
GWHAAZE00000002CDS8254866782548767-
Transcript Sequence

Network for GWHGAAZE008554

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00288.27GHMP_kinases_N1812353.70E-07
PF08544.14GHMP_kinases_C2903624.70E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00919ispE Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName
GO:0016114biological_processterpenoid biosynthetic process
GO:0050515molecular_function4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf41.140
SRR3591706second leaf82.249
SRR3591707mature leaf54.424
SRR3591708Shoot apex59.724
SRR3591709Stem28.453
SRR3591710White floral bud266.756
SRR3591711White flower330.239
SRR3591712Green floral bud42.542
SRR3591713Yellow flower364.543
SRP173429 SRR8316895Juvenile bud stage 29.825
SRR8316896Juvenile bud stage 30.393
SRR8316897Juvenile bud stage 15.108
SRR8316894Third green stage 10.578
SRR8316900Third green stage 33.039
SRR8316901Third green stage 32.340
SRR8316898Complete white stage 67.340
SRR8316899Complete white stage 40.450
SRR8316903Complete white stage 123.967
SRR8316902Silver flowering stage215.256
SRR8316904Silver flowering stage285.511
SRR8316905Silver flowering stage160.677
SRR8316906Gold flowering stage 639.054
SRR8316907Gold flowering stage 520.764
SRR8316908Gold flowering stage 527.400
SRP132670SRR6706286Control21.138
SRR6706287Light intensity 50%22.515
SRR6706288Light intensity 20%19.896
CNP0000432CNS0095592Slightly white alabastrum(diploid) 139.658
CNS0095593Slightly white alabastrum(diploid) 237.957
CNS0095594Slightly white alabastrum(diploid) 343.118
CNS0095595Whole white alabastrum(diploid) 246.714
CNS0095596Whole white alabastrum(diploid) 321.095
CNS0095597Whole white alabastrum(diploid) 435.853
CNS0095598Silvery flower (diploied) 195.192
CNS0095599Silvery flower (diploied) 2106.861
CNS0095600Silvery flower (diploied) 3367.880
CNS0095601Golden flower (diploid) 1154.158
CNS0095602Golden flower (diploid) 2327.335
CNS0095603Golden flower (diploid) 3302.325
CNS0095604Slightly white alabastrum(tetraploid) 134.158
CNS0095605Slightly white alabastrum(tetraploid) 245.459
CNS0095606Slightly white alabastrum(tetraploid) 382.725
CNS0095607Whole white alabastrum(tetraploid) 119.211
CNS0095608Whole white alabastrum(tetraploid) 218.492
CNS0095609Whole white alabastrum(tetraploid) 333.864
CNS0095610Silvery flower (tetraploid) 1337.303
CNS0095611Silvery flower (tetraploid) 2465.235
CNS0095612Silvery flower (tetraploid) 3763.478
CNS0095613Golden flower (tetraploid) 1506.321
CNS0095614Golden flower (tetraploid) 2486.152
CNS0095615Golden flower (tetraploid) 31341.209
CRA001975CRR073297Stem 131.488
CRR073298Stem 227.533
CRR073299Stem 333.294
CRR073300Leaf 124.910
CRR073301Leaf 227.948
CRR073302Leaf 322.538
CRR073303Juvenile bud 129.347
CRR073304Juvenile bud 233.743
CRR073305Juvenile bud 328.280
CRR073306Third green 1446.729
CRR073307Third green 2278.698
CRR073308Third green 3328.099
CRR073309Second white 1562.643
CRR073310Second white 2646.782
CRR073311Second white 3663.445
CRR073312Silver flowering 1664.466
CRR073313Silver flowering 2530.233
CRR073314Silver flowering 3474.979
CRR073315Gold flowering 146.756
CRR073316Gold flowering 252.345
CRR073317Gold flowering 344.444
CRR073318Tawny withering 154.664
CRR073319Tawny withering 246.016
CRR073320Tawny withering 367.216