Gene detail

Detail information of GWHGAAZE008511

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009591795.1	PREDICTED: L-ascorbate oxidase homolog [Nicotiana tomentosiformis]
Swissprot	tr\|P29162\|ASOL_TOBAC	L-ascorbate oxidase homolog (Precursor)
trEMBL	tr\|Q6UN74\|Q6UN74_TOBAC	Ntp302 {ECO:0000313\|EMBL:AAQ90184.1}
TAIR10	AT1G55570.1	SKU5 similar 12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	79063126	79064640	-
GWHAAZE00000002	mRNA	79063126	79064640	-
GWHAAZE00000002	exon	79063937	79064640	-
GWHAAZE00000002	exon	79063126	79063849	-
GWHAAZE00000002	CDS	79063937	79064640	-
GWHAAZE00000002	CDS	79063126	79063849	-

Transcript Sequence
>GWHTAAZE008519 ATTCCGGGTCCTAGCATCAATTGCACCTCCAATAACAATATCTGGGTTAATGTCTTCAACGAAATTGACGAGCCATTTTTGCTCACATGGTCTGGGGTGCAACAAAGGAAGAACTCATGGCAGGACGGAACTGCCGGCACCATGTGCCCGATCATGCCAGGGACCAACTACACATATCGGCTTCAGGTTAAGGACCAAATTGGTACCTTTACCTACTTCCCAACCCTTAACTTACAAAAGGCTGCGGGTGGTGTTGGCGTGCTCAAGGTCCATAGCCGTGAACTCATCCCAGTTCCTTTTGACAACCCAGCTGATGAGTATATTATTGTGATGGGGGATTGGTATAACAAAGGGCACAAGGCAATGAAGAAGATCTTGGACAGTGGACACTCAATTGGCAGGCCTGACGGCATTCAAATAAACGGCAAGTCTGCCAAGGTGAATGATAAGCCCGGAGAGCCACTGTTCACAATGGAGGCTGGCAAAATCTATAGGTATAGGGTATGCAATGTCGGAATGAGGACATCGATAAACTTCAGGTTCCAAGGCCACGCCATGAAGCTTGTTGAGATGGAGGGTTCACACACCGTGCAAAATGACTATGACTCCATGGACTTACATGTCGGTCAATGTGTGTCAGTGTTGGTTAAAGCTGATAAGGATCCCAAGGACTACTACTTTGTTGCATCAAGCAGATTCCTGAACACCGAAGGCATTGCCTGGTCCATCAATCAATTCCGCTCCTTCAGATGGAACCTCACGGCCAGTGCTGCTCGCCCCAACCCTCAGGGATCATACCACTACGGAAAGATTAACATCACCCGCACCATCAAGCTTGTCAACAGCAGGCACCAATCCGATGGAAAGCTCCGCTTTGCCATCAATGGTATTTCTCACACGAATACCGAAACCCCCCTCAAACTTGCCGAATACTTTGGTGTCGCTAACAAGGTGTTTAAGTACGATATCATGGCCGACGAACCCCCATCTGACTCCAGCAAGATCACCGAGGCCCCTAATGTTCTCAATGCCACCTTCCGTAACTTTGTTGAAATCATCTTTGAGAACCATGAGAACACGATTCAAACATGGCACCTCGATGGATACTCTTTCTTCGGAGTGGCTATCGAGCCCGGAACGTGGAGTCCTGAGAAGAGGAAGAATTACAATCTTCTCGATACCGTGAGCAGGCATAACATCCAAGTTTACCCACACTCGTGGGCTGCTATCATGACAACCTTGGACAATGCAGGGATGTGGAACTTGAGATCAGAGATGTGGGAGAGGTACTACTTGGGACAACAGCTATACATAAGTGTTTTATCCCCTGAGCGCTCACTCAGAGACGAGTATAACATTCCTGATAATGCTGTGATATGCGGCCTTGCCAAAGGCTTGCCCAAGCCCCCTAGTTACAACCCAGCCTAA

Network for GWHGAAZE008511

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07732.16	Cu-oxidase_3	1	94	1.20E-30
PF00394.23	Cu-oxidase	106	233	1.40E-35
PF07731.15	Cu-oxidase_2	306	443	2.70E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00423	E1.10.3.3	Metabolic pathways	map01100
K00423	E1.10.3.3	Ascorbate and aldarate metabolism	map00053

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005507	molecular_function	copper ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.763
	SRR3591706	second leaf	0.274
	SRR3591707	mature leaf	0.336
	SRR3591708	Shoot apex	0.945
	SRR3591709	Stem	4.129
	SRR3591710	White floral bud	526.302
	SRR3591711	White flower	34.896
	SRR3591712	Green floral bud	954.060
	SRR3591713	Yellow flower	17.741
SRP173429	SRR8316895	Juvenile bud stage	110.190
	SRR8316896	Juvenile bud stage	485.102
	SRR8316897	Juvenile bud stage	207.060
	SRR8316894	Third green stage	164.236
	SRR8316900	Third green stage	609.483
	SRR8316901	Third green stage	661.782
	SRR8316898	Complete white stage	0.580
	SRR8316899	Complete white stage	5.280
	SRR8316903	Complete white stage	1.017
	SRR8316902	Silver flowering stage	7.579
	SRR8316904	Silver flowering stage	16.229
	SRR8316905	Silver flowering stage	4.586
	SRR8316906	Gold flowering stage	2.993
	SRR8316907	Gold flowering stage	0.678
	SRR8316908	Gold flowering stage	0.880
SRP132670	SRR6706286	Control	416.015
	SRR6706287	Light intensity 50%	374.609
	SRR6706288	Light intensity 20%	309.761
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	509.190
	CNS0095593	Slightly white alabastrum(diploid) 2	371.628
	CNS0095594	Slightly white alabastrum(diploid) 3	604.142
	CNS0095595	Whole white alabastrum(diploid) 2	754.652
	CNS0095596	Whole white alabastrum(diploid) 3	1041.877
	CNS0095597	Whole white alabastrum(diploid) 4	720.502
	CNS0095598	Silvery flower (diploied) 1	34.231
	CNS0095599	Silvery flower (diploied) 2	128.955
	CNS0095600	Silvery flower (diploied) 3	34.844
	CNS0095601	Golden flower (diploid) 1	35.691
	CNS0095602	Golden flower (diploid) 2	27.610
	CNS0095603	Golden flower (diploid) 3	25.116
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1046.985
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1062.620
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.056
	CNS0095607	Whole white alabastrum(tetraploid) 1	1758.310
	CNS0095608	Whole white alabastrum(tetraploid) 2	1972.483
	CNS0095609	Whole white alabastrum(tetraploid) 3	964.233
	CNS0095610	Silvery flower (tetraploid) 1	18.851
	CNS0095611	Silvery flower (tetraploid) 2	76.533
	CNS0095612	Silvery flower (tetraploid) 3	190.377
	CNS0095613	Golden flower (tetraploid) 1	31.343
	CNS0095614	Golden flower (tetraploid) 2	7.166
	CNS0095615	Golden flower (tetraploid) 3	106.246
CRA001975	CRR073297	Stem 1	180.073
	CRR073298	Stem 2	224.200
	CRR073299	Stem 3	158.815
	CRR073300	Leaf 1	466.131
	CRR073301	Leaf 2	456.412
	CRR073302	Leaf 3	259.507
	CRR073303	Juvenile bud 1	420.905
	CRR073304	Juvenile bud 2	418.146
	CRR073305	Juvenile bud 3	58.414
	CRR073306	Third green 1	302.616
	CRR073307	Third green 2	391.479
	CRR073308	Third green 3	299.369
	CRR073309	Second white 1	26.128
	CRR073310	Second white 2	46.823
	CRR073311	Second white 3	57.716
	CRR073312	Silver flowering 1	294.994
	CRR073313	Silver flowering 2	400.059
	CRR073314	Silver flowering 3	196.375
	CRR073315	Gold flowering 1	262.784
	CRR073316	Gold flowering 2	59.922
	CRR073317	Gold flowering 3	171.281
	CRR073318	Tawny withering 1	234.289
	CRR073319	Tawny withering 2	205.452
	CRR073320	Tawny withering 3	195.920