Detail information of GWHGAAZE008394


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010046934.10PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic [Eucalyptus grandis]
Swissprottr|K7WIZ6|RIBR_MAIZE05-amino-6-(5-phosphoribosylamino)uracil reductase (Precursor)
trEMBLtr|A0A059CJS1|A0A059CJS1_EUCGR0Uncharacterized protein {ECO:0000313|EMBL:KCW78652.1}
TAIR10AT3G47390.21E-154cytidine/deoxycytidylate deaminase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene7311934573131622-
GWHAAZE00000002mRNA7311934573131622-
GWHAAZE00000002exon7313149873131622-
GWHAAZE00000002exon7313056173130874-
GWHAAZE00000002exon7312998173130100-
GWHAAZE00000002exon7312097173121216-
GWHAAZE00000002exon7312072373120848-
GWHAAZE00000002exon7311934573119672-
GWHAAZE00000002five_prime_UTR7313149873131622-
GWHAAZE00000002five_prime_UTR7313082273130874-
GWHAAZE00000002CDS7313056173130821-
GWHAAZE00000002CDS7312998173130100-
GWHAAZE00000002CDS7312097173121216-
GWHAAZE00000002CDS7312072373120848-
GWHAAZE00000002CDS7311944573119672-
GWHAAZE00000002three_prime_UTR7311934573119444-
Transcript Sequence

Network for GWHGAAZE008394

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01872.18RibD_C21331.90E-16
PF08719.12NADAR1703231.60E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11752ribD Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Riboflavin metabolismmap00740
Quorum sensingmap02024

Gene Ontology

GO term OntologyName
GO:0009231biological_processriboflavin biosynthetic process
GO:0055114biological_processoxidation-reduction process
GO:0008703molecular_function5-amino-6-(5-phosphoribosylamino)uracil reductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.868
SRR3591706second leaf7.685
SRR3591707mature leaf9.775
SRR3591708Shoot apex9.947
SRR3591709Stem7.590
SRR3591710White floral bud9.362
SRR3591711White flower9.162
SRR3591712Green floral bud15.139
SRR3591713Yellow flower10.955
SRP173429 SRR8316895Juvenile bud stage 8.567
SRR8316896Juvenile bud stage 10.527
SRR8316897Juvenile bud stage 5.638
SRR8316894Third green stage 5.534
SRR8316900Third green stage 16.536
SRR8316901Third green stage 16.576
SRR8316898Complete white stage 5.325
SRR8316899Complete white stage 18.966
SRR8316903Complete white stage 8.509
SRR8316902Silver flowering stage3.701
SRR8316904Silver flowering stage5.240
SRR8316905Silver flowering stage3.420
SRR8316906Gold flowering stage 8.635
SRR8316907Gold flowering stage 9.294
SRR8316908Gold flowering stage 9.589
SRP132670SRR6706286Control15.002
SRR6706287Light intensity 50%15.763
SRR6706288Light intensity 20%17.575
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.967
CNS0095593Slightly white alabastrum(diploid) 211.500
CNS0095594Slightly white alabastrum(diploid) 310.868
CNS0095595Whole white alabastrum(diploid) 211.590
CNS0095596Whole white alabastrum(diploid) 311.962
CNS0095597Whole white alabastrum(diploid) 48.190
CNS0095598Silvery flower (diploied) 110.232
CNS0095599Silvery flower (diploied) 211.309
CNS0095600Silvery flower (diploied) 39.739
CNS0095601Golden flower (diploid) 18.929
CNS0095602Golden flower (diploid) 29.386
CNS0095603Golden flower (diploid) 38.462
CNS0095604Slightly white alabastrum(tetraploid) 112.720
CNS0095605Slightly white alabastrum(tetraploid) 211.836
CNS0095606Slightly white alabastrum(tetraploid) 318.488
CNS0095607Whole white alabastrum(tetraploid) 17.882
CNS0095608Whole white alabastrum(tetraploid) 27.956
CNS0095609Whole white alabastrum(tetraploid) 316.208
CNS0095610Silvery flower (tetraploid) 110.928
CNS0095611Silvery flower (tetraploid) 211.370
CNS0095612Silvery flower (tetraploid) 313.957
CNS0095613Golden flower (tetraploid) 19.063
CNS0095614Golden flower (tetraploid) 28.902
CNS0095615Golden flower (tetraploid) 37.480
CRA001975CRR073297Stem 114.911
CRR073298Stem 216.379
CRR073299Stem 315.686
CRR073300Leaf 116.368
CRR073301Leaf 217.236
CRR073302Leaf 318.590
CRR073303Juvenile bud 114.651
CRR073304Juvenile bud 28.183
CRR073305Juvenile bud 311.080
CRR073306Third green 16.445
CRR073307Third green 24.936
CRR073308Third green 36.869
CRR073309Second white 16.027
CRR073310Second white 28.855
CRR073311Second white 310.129
CRR073312Silver flowering 17.713
CRR073313Silver flowering 25.142
CRR073314Silver flowering 37.135
CRR073315Gold flowering 18.151
CRR073316Gold flowering 213.787
CRR073317Gold flowering 37.511
CRR073318Tawny withering 18.256
CRR073319Tawny withering 27.914
CRR073320Tawny withering 36.759