Gene detail

Detail information of GWHGAAZE008375

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP42112.1	0	hypothetical protein JCGZ_01900 [Jatropha curcas]
Swissprot	tr\|Q94CD8\|E134_ARATH	0	Glucan endo-1,3-beta-glucosidase 4 (Precursor)
trEMBL	tr\|A0A067L109\|A0A067L109_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP42112.1}
TAIR10	AT3G13560.3	8E-179	O-Glycosyl hydrolases family 17 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	72555092	72556354	-
GWHAAZE00000002	mRNA	72555092	72556354	-
GWHAAZE00000002	exon	72555092	72556354	-
GWHAAZE00000002	CDS	72555092	72556354	-

Transcript Sequence
>GWHTAAZE008383 TTTATAGGAATAAACATCGGCACCGATGTGACAAACCTACCAGCTGCAACAGAAGTGGTTGCGATCCTTAAAGCCCATCAAATAACCCACGTTCGTCTTTTCGATGCCGACTCTCATATGCTAAGTGCACTTTCAAACAGCGGAATCGAAGTTATGGTCAGTGTCAATAACGAGGAAGTCTTAGGAATTGGTGAATCTCCCTCAGCAGCAGCTTCTTGGATTAACAAAAACGTTGCTGCTTACTTGCCTTCAACTAACATAACCGCCATTTCTGTCGGCAGTGAAGTTCTTACTTCAATCCCAAATGTAGCCCCCGTTTTGGTTCCAGCTTTAAATTACCTTCACAAAGCCTTAGTTGCTTCAAACCTAAATTATAAAGTCAAAGTTTCGACCCCACAATCGATTGACTTAATTCCCAAGCCATTTCCCCCTTCAACGGCCTCGTTCAATTCTTCATGGAACTCAACGATTTATGGGATTCTTCAGTTTTTGAAGAACACCGATTCATACTTCATGCTAAATGCTTATCCTTATTACGGGTATGTTAATAACGATGGCATTTTCCCAATCGATTACGCTCTTTTTCAGCCACTCACTTCGGTCAAACAGATAGTTGACCCGAACACTCTTTTTCACTATAATAGCATGTTTGATGCTATGGTGGATGCTGCCTATAACTCTATAGATGCTTTTAAATTTTCGGATATCCCAATTGTCGTGACTGAAACCGGCTGGCCGTGGTTCGGTGGGTCCAATGAACCTGATGCCACTATTGATAATGCCGAAACTTTTAATAATAATTTGATCCGGCGGGTTTTAAATAATTCCGGTCCGCCTAGTAAACCTTCTATTCCCATAAATACGTATATTTATGAGCTGTTCAATGAGGATAAGAGACCCGGGCCGGTATCTGAGAGAAACTGGGGTGTTTTTTTCGCCAATGGGTCTGCTGTATATTCACTTACTTTCGGTACTTTGGATCGGATTACGGTGAATTCTTCAGGGAATTTTTGTATAGCAAGACGAGGGGCGGATAATAGTAAGTTGCAAGATGGACTGAATTGGGCTTGCGGGCAAGGCCAGGCTAACTGCACGGCTATTCAATCTGGGCAACCGTGTTATTTCCCTGATACTATACAGAACCATGCTTCCTATGCTTATAATGATTATTATCAGAGGATGCAGAGTGCTGGTGGGACCTGTGACTTTGATGGTACAGCCATGACAACTAACGCCGATCCCAGTAAGTGCTTTCTGTTTTAA

Network for GWHGAAZE008375

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00332.19	Glyco_hydro_17	2	323	2.00E-76
PF07983.14	X8	337	408	1.50E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19892	GN4	Metabolic pathways	map01100
K19892	GN4	Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.131
	SRR3591706	second leaf	9.590
	SRR3591707	mature leaf	2.412
	SRR3591708	Shoot apex	28.478
	SRR3591709	Stem	8.598
	SRR3591710	White floral bud	3.546
	SRR3591711	White flower	3.216
	SRR3591712	Green floral bud	9.144
	SRR3591713	Yellow flower	0.575
SRP173429	SRR8316895	Juvenile bud stage	10.362
	SRR8316896	Juvenile bud stage	11.073
	SRR8316897	Juvenile bud stage	8.993
	SRR8316894	Third green stage	4.350
	SRR8316900	Third green stage	14.377
	SRR8316901	Third green stage	9.934
	SRR8316898	Complete white stage	0.521
	SRR8316899	Complete white stage	8.987
	SRR8316903	Complete white stage	1.027
	SRR8316902	Silver flowering stage	0.261
	SRR8316904	Silver flowering stage	0.214
	SRR8316905	Silver flowering stage	0.081
	SRR8316906	Gold flowering stage	0.149
	SRR8316907	Gold flowering stage	0.186
	SRR8316908	Gold flowering stage	0.164
SRP132670	SRR6706286	Control	10.354
	SRR6706287	Light intensity 50%	10.354
	SRR6706288	Light intensity 20%	12.185
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.386
	CNS0095593	Slightly white alabastrum(diploid) 2	16.611
	CNS0095594	Slightly white alabastrum(diploid) 3	10.671
	CNS0095595	Whole white alabastrum(diploid) 2	11.398
	CNS0095596	Whole white alabastrum(diploid) 3	9.566
	CNS0095597	Whole white alabastrum(diploid) 4	8.305
	CNS0095598	Silvery flower (diploied) 1	13.196
	CNS0095599	Silvery flower (diploied) 2	11.532
	CNS0095600	Silvery flower (diploied) 3	3.222
	CNS0095601	Golden flower (diploid) 1	9.872
	CNS0095602	Golden flower (diploid) 2	5.291
	CNS0095603	Golden flower (diploid) 3	6.266
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.270
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.548
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.840
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.790
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.860
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.820
	CNS0095610	Silvery flower (tetraploid) 1	1.117
	CNS0095611	Silvery flower (tetraploid) 2	2.620
	CNS0095612	Silvery flower (tetraploid) 3	1.348
	CNS0095613	Golden flower (tetraploid) 1	0.133
	CNS0095614	Golden flower (tetraploid) 2	0.392
	CNS0095615	Golden flower (tetraploid) 3	0.118
CRA001975	CRR073297	Stem 1	14.075
	CRR073298	Stem 2	15.181
	CRR073299	Stem 3	19.258
	CRR073300	Leaf 1	12.949
	CRR073301	Leaf 2	11.126
	CRR073302	Leaf 3	14.627
	CRR073303	Juvenile bud 1	11.504
	CRR073304	Juvenile bud 2	5.403
	CRR073305	Juvenile bud 3	14.174
	CRR073306	Third green 1	0.292
	CRR073307	Third green 2	0.145
	CRR073308	Third green 3	0.527
	CRR073309	Second white 1	0.817
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	8.999
	CRR073316	Gold flowering 2	11.066
	CRR073317	Gold flowering 3	7.858
	CRR073318	Tawny withering 1	24.561
	CRR073319	Tawny withering 2	23.151
	CRR073320	Tawny withering 3	36.668