Gene detail

Detail information of GWHGAAZE008282

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002266954.1	1.6757E-131	PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Vitis vinifera]
trEMBL	tr\|D7T1C1\|D7T1C1_VITVI	6E-132	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI24301.3}
TAIR10	AT1G50510.1	4E-87	indigoidine synthase A family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	68442569	68447063	+
GWHAAZE00000002	mRNA	68442569	68447063	+
GWHAAZE00000002	exon	68442569	68442643	+
GWHAAZE00000002	exon	68444167	68444226	+
GWHAAZE00000002	exon	68444356	68444416	+
GWHAAZE00000002	exon	68444895	68445001	+
GWHAAZE00000002	exon	68445097	68445174	+
GWHAAZE00000002	exon	68445657	68445706	+
GWHAAZE00000002	exon	68445813	68445907	+
GWHAAZE00000002	exon	68446216	68446284	+
GWHAAZE00000002	exon	68446665	68446757	+
GWHAAZE00000002	exon	68447044	68447063	+
GWHAAZE00000002	CDS	68442569	68442643	+
GWHAAZE00000002	CDS	68444167	68444226	+
GWHAAZE00000002	CDS	68444356	68444416	+
GWHAAZE00000002	CDS	68444895	68445001	+
GWHAAZE00000002	CDS	68445097	68445174	+
GWHAAZE00000002	CDS	68445657	68445706	+
GWHAAZE00000002	CDS	68445813	68445907	+
GWHAAZE00000002	CDS	68446216	68446284	+
GWHAAZE00000002	CDS	68446665	68446757	+
GWHAAZE00000002	CDS	68447044	68447063	+

Transcript Sequence
>GWHTAAZE008290 ATGGAAGAACTAGAGAAGCTTGCAAAGCTGGGAAAAAAAGCTCGAAAGACAGCTCGCAGAGACATTGCTCATGTTGTGGCTACAAGAGGCAATGGTGCAACAACTGTTTCTGCTACTATGTTTTTTGCTTCTATGGTTGGCATCCCAGTTTTTGTTACTGGGGGTATTGGAGGAGTGCATAGATATGGAGAAAAGACGATGGATATATCATCTGATCTAACCGAACTTGGAAGAACTCCTGTTGCTGTAATCTCTGCTGGCGTAAAATCAATCTTGGATATTCCAAGAACCCTTGAGTATTTGGAAACTCAGGGAGTTTGTGTTGCTGCTTACAAGACCGACGAGTTTCCTGCATTTTTTACGGAAAAAAGTGGCTGCAAGGCACCTTGCCGAGTAGATTCACCACAAGACTGTGCCCGGCTAATTGGCAAAACTGGCATTGTCATAGCAGTCCCTATACCAAAAGAGCACTCTGCTTCCGGAAGTCTAACTGAATCTGCTATCCAAAGAGCCCTTAAAGAAGCCGGCAATGCTGAAACACCCTTCTTGCTTGCTAGAGTGAGTGAACTAACTGGAGGAGCCTCTTTGGCTTCAATATTAGACATTGCTCTTGTGAAAAACAATGCGCTTCTTGGCGCTAAGATTGCTACCTCGCTTGCGCAACTCCGAGAACAAGGCTGTAATAAAGGTGATGCTGATGCAGAATAA

Network for GWHGAAZE008282

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04227.13	Indigoidine_A	2	217	1.60E-84

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16329	psuG	Metabolic pathways	map01100
K16329	psuG	Pyrimidine metabolism	map00240

Gene Ontology

GO term	Ontology	Name
GO:0016798	molecular_function	hydrolase activity, acting on glycosyl bonds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.014
	SRR3591706	second leaf	8.531
	SRR3591707	mature leaf	4.210
	SRR3591708	Shoot apex	6.061
	SRR3591709	Stem	5.049
	SRR3591710	White floral bud	4.447
	SRR3591711	White flower	2.615
	SRR3591712	Green floral bud	6.354
	SRR3591713	Yellow flower	3.108
SRP173429	SRR8316895	Juvenile bud stage	6.376
	SRR8316896	Juvenile bud stage	5.420
	SRR8316897	Juvenile bud stage	3.092
	SRR8316894	Third green stage	1.935
	SRR8316900	Third green stage	7.060
	SRR8316901	Third green stage	4.610
	SRR8316898	Complete white stage	3.143
	SRR8316899	Complete white stage	8.253
	SRR8316903	Complete white stage	3.575
	SRR8316902	Silver flowering stage	1.453
	SRR8316904	Silver flowering stage	2.531
	SRR8316905	Silver flowering stage	1.491
	SRR8316906	Gold flowering stage	2.762
	SRR8316907	Gold flowering stage	4.477
	SRR8316908	Gold flowering stage	3.760
SRP132670	SRR6706286	Control	6.452
	SRR6706287	Light intensity 50%	7.047
	SRR6706288	Light intensity 20%	7.099
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.497
	CNS0095593	Slightly white alabastrum(diploid) 2	5.206
	CNS0095594	Slightly white alabastrum(diploid) 3	2.983
	CNS0095595	Whole white alabastrum(diploid) 2	4.289
	CNS0095596	Whole white alabastrum(diploid) 3	3.317
	CNS0095597	Whole white alabastrum(diploid) 4	3.369
	CNS0095598	Silvery flower (diploied) 1	4.617
	CNS0095599	Silvery flower (diploied) 2	4.932
	CNS0095600	Silvery flower (diploied) 3	3.378
	CNS0095601	Golden flower (diploid) 1	3.820
	CNS0095602	Golden flower (diploid) 2	2.149
	CNS0095603	Golden flower (diploid) 3	3.357
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.809
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.348
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.648
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.905
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.420
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.238
	CNS0095610	Silvery flower (tetraploid) 1	4.407
	CNS0095611	Silvery flower (tetraploid) 2	4.859
	CNS0095612	Silvery flower (tetraploid) 3	5.872
	CNS0095613	Golden flower (tetraploid) 1	2.569
	CNS0095614	Golden flower (tetraploid) 2	2.566
	CNS0095615	Golden flower (tetraploid) 3	2.058
CRA001975	CRR073297	Stem 1	8.297
	CRR073298	Stem 2	6.956
	CRR073299	Stem 3	5.328
	CRR073300	Leaf 1	7.234
	CRR073301	Leaf 2	4.936
	CRR073302	Leaf 3	5.171
	CRR073303	Juvenile bud 1	4.696
	CRR073304	Juvenile bud 2	3.337
	CRR073305	Juvenile bud 3	4.286
	CRR073306	Third green 1	1.727
	CRR073307	Third green 2	1.711
	CRR073308	Third green 3	1.412
	CRR073309	Second white 1	2.661
	CRR073310	Second white 2	4.301
	CRR073311	Second white 3	1.896
	CRR073312	Silver flowering 1	0.681
	CRR073313	Silver flowering 2	2.391
	CRR073314	Silver flowering 3	0.808
	CRR073315	Gold flowering 1	8.179
	CRR073316	Gold flowering 2	10.660
	CRR073317	Gold flowering 3	2.210
	CRR073318	Tawny withering 1	5.132
	CRR073319	Tawny withering 2	5.531
	CRR073320	Tawny withering 3	3.919