Gene detail

Detail information of GWHGAAZE008233

Functional Annotation

Database	Orthologs	Annotation
Nr	ACJ54281.1	lipoxygenase [Camellia sinensis]
Swissprot	tr\|O24370\|LOX21_SOLTU	Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBL	tr\|B7TZ47\|B7TZ47_CAMSI	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}
TAIR10	AT3G45140.1	lipoxygenase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	66020143	66029808	+
GWHAAZE00000002	mRNA	66020143	66029808	+
GWHAAZE00000002	exon	66020143	66020531	+
GWHAAZE00000002	exon	66024247	66024515	+
GWHAAZE00000002	exon	66025554	66025791	+
GWHAAZE00000002	exon	66026098	66026415	+
GWHAAZE00000002	exon	66026752	66026837	+
GWHAAZE00000002	exon	66026948	66027058	+
GWHAAZE00000002	exon	66027504	66027805	+
GWHAAZE00000002	exon	66028039	66028305	+
GWHAAZE00000002	exon	66028471	66029279	+
GWHAAZE00000002	exon	66029777	66029808	+
GWHAAZE00000002	five_prime_UTR	66020143	66020197	+
GWHAAZE00000002	CDS	66020198	66020531	+
GWHAAZE00000002	CDS	66024247	66024515	+
GWHAAZE00000002	CDS	66025554	66025791	+
GWHAAZE00000002	CDS	66026098	66026415	+
GWHAAZE00000002	CDS	66026752	66026837	+
GWHAAZE00000002	CDS	66026948	66027058	+
GWHAAZE00000002	CDS	66027504	66027805	+
GWHAAZE00000002	CDS	66028039	66028305	+
GWHAAZE00000002	CDS	66028471	66029279	+
GWHAAZE00000002	CDS	66029777	66029808	+

Transcript Sequence
>GWHTAAZE008241 CCCTTCTTTCTTCAACCTCCCCCTCCTATCATCCAAACACCAAGCCAAAACCAAAATGTTGACAACTCCGGTCCACCACCACCACTCAACCACCAAAACCCTAGTACCATGGCAAAAGCCCTTCATCACCGGTGACTCCACCGCCTTGTTCCCAATCCTCCAAAAATCCGTGCACCGTAAAACGTGCCGGTCCTTTCGGGTTGGCCATAGAGCCATAAAGGCCGTGGCTACCTCGGGCACCGAAAAATCCACACGCGTTAAGGCTGTGGTCACGGTCCAAGTGACCGTGGGTGGGTTCTTGTCAAACATAGGGTTGGACCTAGACGACATCACTGACTTGCTCGGTAAATCAATGCTTTTGGAGTTTGTTGCTGCCGAGCTTGATGAAAAGACTGGATTGGAGAAGAAAACAATCAAAGGGTATGCACACAAGACTGGCAGAGAGAAGGATGACATGAATTATGAGTTTGACTTTGAGGTGCCCTCAGAATTTGGTGAGATTGGTGCTGTTTTGGTAGAGAATGAGCACCACAAGGAGATGTTCATTAAGACCATATCACTTGATGGTTTCCCTAATGGCACTATTAATTTCAATTGTGACTCTTGGGTTCATTCCAAAAATGATAATCCTGAGAAGAGGATTTTCTTCACCAACAAGTCATACTTACCATCAGAGACACCAAGTGGGGTGCTGAAATTGAGAGAAAAAGAGTTAACACTTCTTCGAGGAGACGGCACAGGAGAGCGAAAATTGTCGGACAGAATTTATGATTATGATGTTTACAATGATCTTGGCGATCCCGACAAGAGCGATGATCTAGCTAGACCCGTATTAGGTGGTAAGGAGAATCCATACCCTAGGCGTGGCAGAACAGGCCGCCCACGAACCAAGAAAGATCCATTATCTGAGTCAAGGACGACCTTGAATTATGTTCCAAGAGATGAAGGATTCTCAGAGGTGAAGAGCTTAACATTCTCAGCAAAGACACTCTACTCCGTTTTACACGCCGTTTTGCCATCGTTAGAGACGCAGTTCGTGGATCCTGACCTTGGATTCCCTTACTTTACGGCCATAGATTCCCTATTTAACGAAGGCGTAGATTTGCCCGTTAAGATTGAGCCTACTCTCGGGAATCTTATACCTAGAATTATCAAAGACGTTACGGATACTAGTAAGGGTCTCTTGCGGTTCGAGACCCCCGAAATGCTTGACAGAGATAAATTTGCTTGGATGAGGGATGAGGAATTTGGTCGACAAACTTTGGCTGGTCTGAACCCTTACAGTATACAATTGGTGAAGGAATGGCCATTGAAAAGTAAATTGGACCCTTCAGTGTACGGGTCACCAGATTCACTAATCACCAAACAGGTGGTGGAGCGAGTGATCGGAGGCTTCCTGACCCTTGAGGAGGCTTTAAAACAAAAGAAGTTATTCATCCTGGATTACCATGATCTCCTGTTGCCGTATGTTAATATAGTAAGAGAGCAAAAGGGGACAACCTTGTACGGATCGCGGACTTTGTTCTTTCTAACACCAACTGGTACATTAAGGCCAGTAGCCATTGAGTTAACTCGGCCACCAGGTAATGGAAAACCTCAATGGAGTAAAGTGCTTACTCCTTGTTGGGATGCCACTGGTGCTTGGCTTTGGAAACTAGCTAAATCTCATGTCCTCGCCCACGACTCCGGTTATCACCAGCTAGTTAGCCACTGGCTAAGGACCCACTGCGTGACAGAGCCTTACATAATCGCGACAAATAGACAACTTAGTGCAATGCACCCGATTTATAGGCTATTACACCCGCATTTTCGATACACTATGGAGATTAATGCTTTGGCTCGATCAGCTCTCATCAATGCGGGCGGCATTATTGAGTCTGCTTTCTCACCCGGGAAGTACTCTATTCAACTTAGCTCTGCAGCCTATGACTTGCAATGGCGTTTCGATACCCAGGCGTTACCCGCTGACCTAATTAGCAGGGGAATGGCTGAGGAAGATCCAACAGCACCCCATGGACTCAAGCTAGCAATTGAAGACTACCCTTTTGCTAATGATGGTCTAGTCCTTTATGATGCCATTAAACAATGGGTCACTGACTATGTCACCCACTACTACCCAAACCCAACCCTAGTTGAATCGGACAGTGAGCTTCAATCCTGGTGGACCGAGATCCGAACCAAAGGCCACGCCGATAAAAAGGACGAACCTTGGTGGCCAGAGCTCAAGACCCCCGATGACCTTATCGGTATCCTCACAACCATAACGTGGGTCACATCAGGGCACCACTCAGCGGTCAACTTCGGTCAGTACACTTATGCGGGTTATTTCCCCAACAGGCCTACGACTGCGAGAACGAAACTCCCCTGCGAGGACCCCACGGACGAGGAGTGGAAGAGCTTCGAACTAAGGCCAGAGGACGAGATTTTGTCATGTTTCCCTTCGCAATTGCAGGCGACTAAAGTAATGGCGATTTTGGACGTCTTATCGAACCACTCGGTTGATGAGGAGTATATCGGGGCTACTTTGGAGCCTTCTTTTAAGGAGAATCCGGCAATTAATGCCGCATATGAGGTATTTGAGGGGAAGTTAAAAGAGCTTGAAGGGATTATTGATGCAAGGAATAATGATTCAAAATTCAAGAACAGGACTGGGGCTGGTGTTGTACCTTATGAGCTATTGAAGCCTTCTTCTGGGCCTGGGTTACTTCAAGAGGTGTTCCTAATAGCATTTCCATTTGAGGTTTTATGTAATCTATGTGTTGTTGGTTGTGGGAGTGGTGACTTTGAAGGTTTAAGAAACAAAACTGACAAGGCAAAGTGA

Network for GWHGAAZE008233

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01477.24	PLAT	133	198	2.70E-10
PF00305.20	Lipoxygenase	212	877	0

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00454	LOX2S	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Linoleic acid metabolism	map00591
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	molecular_function	metal ion binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	556.948
	SRR3591706	second leaf	438.486
	SRR3591707	mature leaf	1263.460
	SRR3591708	Shoot apex	416.414
	SRR3591709	Stem	79.146
	SRR3591710	White floral bud	767.033
	SRR3591711	White flower	561.609
	SRR3591712	Green floral bud	679.171
	SRR3591713	Yellow flower	173.014
SRP173429	SRR8316895	Juvenile bud stage	439.988
	SRR8316896	Juvenile bud stage	500.637
	SRR8316897	Juvenile bud stage	149.869
	SRR8316894	Third green stage	217.580
	SRR8316900	Third green stage	550.267
	SRR8316901	Third green stage	513.845
	SRR8316898	Complete white stage	170.948
	SRR8316899	Complete white stage	481.234
	SRR8316903	Complete white stage	390.789
	SRR8316902	Silver flowering stage	75.281
	SRR8316904	Silver flowering stage	166.496
	SRR8316905	Silver flowering stage	82.662
	SRR8316906	Gold flowering stage	57.406
	SRR8316907	Gold flowering stage	145.757
	SRR8316908	Gold flowering stage	117.354
SRP132670	SRR6706286	Control	758.323
	SRR6706287	Light intensity 50%	721.985
	SRR6706288	Light intensity 20%	697.032
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	268.537
	CNS0095593	Slightly white alabastrum(diploid) 2	195.653
	CNS0095594	Slightly white alabastrum(diploid) 3	233.643
	CNS0095595	Whole white alabastrum(diploid) 2	181.502
	CNS0095596	Whole white alabastrum(diploid) 3	264.894
	CNS0095597	Whole white alabastrum(diploid) 4	309.201
	CNS0095598	Silvery flower (diploied) 1	1111.226
	CNS0095599	Silvery flower (diploied) 2	734.618
	CNS0095600	Silvery flower (diploied) 3	346.269
	CNS0095601	Golden flower (diploid) 1	634.495
	CNS0095602	Golden flower (diploid) 2	574.140
	CNS0095603	Golden flower (diploid) 3	543.407
	CNS0095604	Slightly white alabastrum(tetraploid) 1	190.643
	CNS0095605	Slightly white alabastrum(tetraploid) 2	205.160
	CNS0095606	Slightly white alabastrum(tetraploid) 3	347.654
	CNS0095607	Whole white alabastrum(tetraploid) 1	198.522
	CNS0095608	Whole white alabastrum(tetraploid) 2	159.044
	CNS0095609	Whole white alabastrum(tetraploid) 3	255.597
	CNS0095610	Silvery flower (tetraploid) 1	114.745
	CNS0095611	Silvery flower (tetraploid) 2	314.367
	CNS0095612	Silvery flower (tetraploid) 3	141.721
	CNS0095613	Golden flower (tetraploid) 1	57.770
	CNS0095614	Golden flower (tetraploid) 2	203.697
	CNS0095615	Golden flower (tetraploid) 3	69.502
CRA001975	CRR073297	Stem 1	1025.071
	CRR073298	Stem 2	936.303
	CRR073299	Stem 3	1149.183
	CRR073300	Leaf 1	418.104
	CRR073301	Leaf 2	372.748
	CRR073302	Leaf 3	367.680
	CRR073303	Juvenile bud 1	372.880
	CRR073304	Juvenile bud 2	481.533
	CRR073305	Juvenile bud 3	444.284
	CRR073306	Third green 1	196.441
	CRR073307	Third green 2	204.246
	CRR073308	Third green 3	234.045
	CRR073309	Second white 1	124.951
	CRR073310	Second white 2	46.177
	CRR073311	Second white 3	32.759
	CRR073312	Silver flowering 1	28.698
	CRR073313	Silver flowering 2	33.909
	CRR073314	Silver flowering 3	28.217
	CRR073315	Gold flowering 1	16.169
	CRR073316	Gold flowering 2	60.957
	CRR073317	Gold flowering 3	85.499
	CRR073318	Tawny withering 1	26.500
	CRR073319	Tawny withering 2	89.124
	CRR073320	Tawny withering 3	10.191